Variant report

Variant	rs35428486
Chromosome Location	chr18:12154497-12154498
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10011798	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10015121	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10015477	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10021020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10021790	0.88[ASN][1000 genomes]
rs10034336	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1010902	0.90[ASN][1000 genomes]
rs1010903	0.90[ASN][1000 genomes]
rs11097123	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11097124	0.83[ASN][1000 genomes]
rs11097125	0.97[EUR][1000 genomes]
rs12503045	0.97[EUR][1000 genomes]
rs12507165	0.97[EUR][1000 genomes]
rs12641570	0.97[EUR][1000 genomes]
rs13115795	0.89[ASN][1000 genomes]
rs13120981	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13137483	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1374935	0.98[EUR][1000 genomes]
rs17012132	0.89[ASN][1000 genomes]
rs1868244	0.97[EUR][1000 genomes]
rs1985944	0.90[ASN][1000 genomes]
rs2121871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2594274	0.95[EUR][1000 genomes]
rs2594283	0.94[EUR][1000 genomes]
rs2705629	0.96[EUR][1000 genomes]
rs28446826	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28641910	0.93[ASN][1000 genomes]
rs28650493	0.93[ASN][1000 genomes]
rs28716151	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2904148	0.91[EUR][1000 genomes]
rs2904150	0.98[EUR][1000 genomes]
rs4235082	0.96[EUR][1000 genomes]
rs55698195	0.91[ASN][1000 genomes]
rs55889191	0.95[EUR][1000 genomes]
rs56062410	0.91[EUR][1000 genomes]
rs56201068	0.95[ASN][1000 genomes]
rs67758970	0.97[EUR][1000 genomes]
rs6823051	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6843070	0.97[EUR][1000 genomes]
rs6846822	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72667703	0.90[ASN][1000 genomes]
rs72667705	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909390	chr18:11987988-12155371	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv909393	chr18:12001258-12155371	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1063125	chr18:12046892-12918251	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	130 gene(s)	inside rSNPs	diseases
4	nsv1055343	chr18:12107012-12226356	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:12154200-12183800	Weak transcription	Pancreas	Pancrea

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