Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12726896	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12747764	0.87[EUR][1000 genomes]
rs12756596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1999102	0.87[EUR][1000 genomes]
rs2182702	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34429079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34856254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35282297	0.87[EUR][1000 genomes]
rs485666	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs486808	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs487631	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs497749	0.88[ASN][1000 genomes]
rs497769	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs509846	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs514201	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs564851	0.88[ASN][1000 genomes]
rs608767	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs611732	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs612769	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61831012	0.91[ASN][1000 genomes]
rs61831041	0.95[ASN][1000 genomes]
rs655723	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs657019	0.88[ASN][1000 genomes]
rs675446	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72740921	0.96[ASN][1000 genomes]
rs7535215	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3372415	chr1:193612172-193988265	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv548663	chr1:193847597-193901506	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3391029	chr1:193882344-193918949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193895400-193897400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
2	chr1:193896000-193897200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:193896200-193896400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:193896200-193896800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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