Variant report

Variant	rs35447333
Chromosome Location	chr11:18085987-18085988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:18034389..18036116-chr11:18083938..18086821,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129158	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10500831	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10832880	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832882	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11024458	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11024460	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11024461	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11024468	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11024476	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11024482	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11024484	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11024485	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11024493	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12363226	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12364327	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12792460	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2168361	0.81[ASN][1000 genomes]
rs2263407	0.81[ASN][1000 genomes]
rs2468841	0.81[ASN][1000 genomes]
rs2468842	0.81[ASN][1000 genomes]
rs4052539	0.81[ASN][1000 genomes]
rs5790015	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61882530	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7117439	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7118373	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7131255	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7131454	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7929920	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7933259	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7934091	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7942794	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7943725	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7943884	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs907923	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs35447333	SAAL1	cis	Adipose Subcutaneous	GTEx
rs35447333	SAAL1	cis	Esophagus Muscularis	GTEx
rs35447333	SAAL1	cis	lung	GTEx
rs35447333	SAAL1	cis	Skin Sun Exposed Lower leg	GTEx
rs35447333	SAAL1	cis	Artery Tibial	GTEx
rs35447333	MRGPRX3	cis	Esophagus Mucosa	GTEx
rs35447333	SAAL1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18070800-18102600	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:18081400-18100400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr11:18083200-18109000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:18083400-18102400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:18084800-18086600	Enhancers	Liver	Liver
6	chr11:18084800-18087800	Enhancers	Stomach Mucosa	stomach
7	chr11:18084800-18090200	Weak transcription	Primary T cells from cord blood	blood
8	chr11:18084800-18108400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:18085000-18086000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:18085200-18097000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:18085200-18104200	Weak transcription	Fetal Intestine Small	intestine
12	chr11:18085200-18113000	Weak transcription	Fetal Brain Male	brain
13	chr11:18085400-18093800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:18085600-18086000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr11:18085600-18086800	Weak transcription	Gastric	stomach
16	chr11:18085600-18101000	Weak transcription	Thymus	Thymus
17	chr11:18085600-18102000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:18085800-18086000	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr11:18085800-18087400	Enhancers	Pancreas	Pancrea
20	chr11:18085800-18095600	Weak transcription	Primary B cells from cord blood	blood
21	chr11:18085800-18095800	Weak transcription	Adipose Nuclei	Adipose
22	chr11:18085800-18100600	Weak transcription	Fetal Kidney	kidney
23	chr11:18085800-18109600	Weak transcription	Spleen	Spleen

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