Variant report

Variant	rs35479711
Chromosome Location	chr14:72408767-72408768
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10147777	0.87[ASN][1000 genomes]
rs11846754	0.87[ASN][1000 genomes]
rs11850532	0.84[ASN][1000 genomes]
rs12891745	0.81[EUR][1000 genomes]
rs17104975	0.84[ASN][1000 genomes]
rs2238283	0.83[ASN][1000 genomes]
rs2238285	0.88[ASN][1000 genomes]
rs2239270	0.80[ASN][1000 genomes]
rs23219	0.85[ASN][1000 genomes]
rs34836658	0.82[EUR][1000 genomes]
rs34836887	0.81[EUR][1000 genomes]
rs35077074	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35607894	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36327	0.85[ASN][1000 genomes]
rs59307289	0.83[ASN][1000 genomes]
rs71427137	0.82[EUR][1000 genomes]
rs714974	0.81[EUR][1000 genomes]
rs714975	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72407600-72409200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:72408400-72409400	Enhancers	GM12878-XiMat	blood
3	chr14:72408600-72409400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:72408600-72412600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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