Variant report

Variant	rs35482792
Chromosome Location	chr6:164258660-164258661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr6:164258291-164259545	U2OS	brain:	n/a	n/a
2	KAP1	chr6:164258279-164259493	HEK293	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164242074..164244714-chr6:164257736..164260576,2	K562	blood:

Variant related genes	Relation type
RN7SL366P	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv1798922	chr6:164257563-164298780	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164255800-164258800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164256800-164260600	Enhancers	Fetal Heart	heart
3	chr6:164257000-164258800	Weak transcription	Right Ventricle	heart
4	chr6:164257600-164258800	Enhancers	Fetal Lung	lung
5	chr6:164257600-164258800	Enhancers	Fetal Stomach	stomach
6	chr6:164257800-164259200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:164257800-164259600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:164258000-164258800	Active TSS	Brain Cingulate Gyrus	brain
9	chr6:164258200-164258800	Active TSS	Brain Hippocampus Middle	brain
10	chr6:164258200-164258800	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr6:164258200-164258800	Enhancers	Colon Smooth Muscle	Colon
12	chr6:164258200-164259200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr6:164258200-164259200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
14	chr6:164258200-164259400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:164258200-164259400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:164258200-164259400	Active TSS	Brain Anterior Caudate	brain
17	chr6:164258200-164259400	Active TSS	Brain Substantia Nigra	brain
18	chr6:164258400-164258800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:164258400-164258800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:164258400-164258800	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr6:164258400-164258800	Active TSS	Fetal Brain Female	brain
22	chr6:164258400-164258800	Enhancers	NHLF	lung
23	chr6:164258400-164259000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr6:164258400-164259000	Flanking Active TSS	Fetal Brain Male	brain
25	chr6:164258400-164259000	Active TSS	Stomach Smooth Muscle	stomach
26	chr6:164258400-164259200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:164258400-164259200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr6:164258400-164259400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:164258400-164259400	Enhancers	Fetal Kidney	kidney
30	chr6:164258400-164259600	Active TSS	Ovary	ovary
31	chr6:164258600-164258800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:164258600-164258800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:164258600-164258800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:164258600-164258800	Active TSS	Brain Angular Gyrus	brain
35	chr6:164258600-164258800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr6:164258600-164258800	Enhancers	Fetal Muscle Trunk	muscle
37	chr6:164258600-164258800	Active TSS	Psoas Muscle	Psoas
38	chr6:164258600-164258800	Active TSS	Right Atrium	heart
39	chr6:164258600-164258800	Bivalent Enhancer	K562	blood
40	chr6:164258600-164259000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:164258600-164259000	Flanking Active TSS	Fetal Muscle Leg	muscle
42	chr6:164258600-164259000	Flanking Active TSS	Rectal Smooth Muscle	rectum
43	chr6:164258600-164259200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:164258600-164259200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:164258600-164259200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:164258600-164259200	Flanking Active TSS	Adipose Nuclei	Adipose
47	chr6:164258600-164259200	Active TSS	Colonic Mucosa	Colon
48	chr6:164258600-164259200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
49	chr6:164258600-164259200	Active TSS	Rectal Mucosa Donor 29	rectum
50	chr6:164258600-164259200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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