Variant report

Variant	rs354941
Chromosome Location	chr4:142067769-142067770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10028355	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs1027815	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs10519586	0.98[EUR][1000 genomes]
rs1507178	0.99[EUR][1000 genomes]
rs187139	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs189568	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2033612	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs354939	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4123363	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4956515	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4956516	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4956517	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4956518	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs62324904	0.96[EUR][1000 genomes]
rs62324905	0.96[EUR][1000 genomes]
rs6835953	0.97[EUR][1000 genomes]
rs6853785	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72724492	0.96[EUR][1000 genomes]
rs7669929	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv880170	chr4:142046828-142137165	Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2757959	chr4:142065661-142367951	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2759287	chr4:142065661-142367951	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142066800-142068400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:142067600-142068400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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