Variant report

Variant	rs35494193
Chromosome Location	chr4:48084793-48084794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr4:48084680-48084830	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
TXK	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10007288	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13118073	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13123671	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13138066	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1466998	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1567218	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17674224	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34059656	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35067106	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35201668	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35590286	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3792624	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4589663	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55718430	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67723804	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6825925	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6844940	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6850108	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73244480	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7654844	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7679010	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48067600-48102400	Strong transcription	Primary T helper cells fromperipheralblood	blood
2	chr4:48069800-48088000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:48070800-48105200	Weak transcription	GM12878-XiMat	blood
4	chr4:48073800-48088000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:48073800-48088000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:48076600-48092400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr4:48079000-48087400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr4:48080600-48085200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr4:48081600-48094200	Weak transcription	Pancreas	Pancrea
10	chr4:48082400-48085200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr4:48082400-48088400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr4:48082600-48085200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr4:48082600-48086200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr4:48082600-48088000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr4:48082800-48088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:48082800-48088200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr4:48083000-48098000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:48083000-48098200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr4:48083400-48098200	Strong transcription	Primary T cells from cord blood	blood
20	chr4:48084000-48084800	Enhancers	Placenta Amnion	Placenta Amnion
21	chr4:48084400-48085400	Enhancers	Placenta	Placenta
22	chr4:48084400-48088000	Weak transcription	Aorta	Aorta
23	chr4:48084400-48098000	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr4:48084600-48085000	Weak transcription	Hela-S3	cervix
25	chr4:48084600-48088600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr4:48084600-48101600	Strong transcription	Primary T helper cells PMA-I stimulated	--

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