Variant report

Variant	rs35505230
Chromosome Location	chr1:220570304-220570305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10779404	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11118536	0.95[EUR][1000 genomes]
rs11118537	0.95[EUR][1000 genomes]
rs11118545	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12132226	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12732389	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12743787	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1416328	0.95[EUR][1000 genomes]
rs4846318	0.93[EUR][1000 genomes]
rs4846319	0.95[EUR][1000 genomes]
rs4846635	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66502079	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6662577	0.95[EUR][1000 genomes]
rs6674649	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6702655	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6702774	0.95[EUR][1000 genomes]
rs72730682	0.95[EUR][1000 genomes]
rs7528215	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3369301	chr1:220569629-220572627	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220565400-220583000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links