Variant report

Variant	rs35514223
Chromosome Location	chr7:104518637-104518638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1075229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11561931	0.90[ASN][1000 genomes]
rs12665943	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17706864	0.83[ASN][1000 genomes]
rs2041830	0.90[ASN][1000 genomes]
rs34477839	0.90[ASN][1000 genomes]
rs3815553	0.90[ASN][1000 genomes]
rs62485455	0.90[ASN][1000 genomes]
rs7458894	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104509800-104524400	Weak transcription	Pancreas	Pancrea
2	chr7:104511600-104519600	Weak transcription	Fetal Intestine Large	intestine
3	chr7:104512000-104524000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:104516000-104519600	Weak transcription	Fetal Intestine Small	intestine
5	chr7:104518600-104518800	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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