Variant report

Variant	rs35523157
Chromosome Location	chrX:31620838-31620839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1039159	0.96[GIH][hapmap];0.85[LWK][hapmap];0.82[TSI][hapmap]
rs1114138	0.91[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs12556458	0.80[CHB][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];0.87[JPT][hapmap]
rs1497445	0.91[CEU][hapmap];0.88[TSI][hapmap]
rs1497447	0.84[GIH][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap]
rs1921961	1.00[CEU][hapmap];0.92[GIH][hapmap]
rs2030002	0.96[GIH][hapmap]
rs2047372	0.92[GIH][hapmap]
rs2173221	0.82[YRI][hapmap]
rs4829106	0.87[JPT][hapmap]
rs4829107	0.91[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap]
rs5927018	0.91[CEU][hapmap]
rs5927023	0.91[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap]
rs5927025	0.82[CEU][hapmap]
rs5927781	1.00[CEU][hapmap]
rs5927788	0.96[GIH][hapmap]
rs5971587	0.82[GIH][hapmap]
rs5971588	0.82[GIH][hapmap]
rs6527097	0.84[GIH][hapmap]
rs6631341	0.84[CEU][hapmap];0.92[GIH][hapmap]
rs7057494	0.82[CEU][hapmap]
rs7066656	0.87[CHB][hapmap];0.96[CHD][hapmap];0.81[GIH][hapmap];0.93[JPT][hapmap]
rs716354	0.85[ASW][hapmap];1.00[CEU][hapmap];0.80[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.88[LWK][hapmap];0.96[MKK][hapmap];0.82[TSI][hapmap];0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869389	chrX:31207964-31963300	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv481964	chrX:31270220-31672751	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv531098	chrX:31462522-31824884	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv481719	chrX:31470100-31807209	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv481814	chrX:31566314-32058570	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv521457	chrX:31580537-31634092	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv481764	chrX:31587315-31944285	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv481778	chrX:31604303-31983342	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv520230	chrX:31611075-31919659	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv481755	chrX:31616904-31927606	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv481902	chrX:31619444-32462711	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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