Variant report

Variant	rs35534502
Chromosome Location	chr7:6639612-6639613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:6639577-6640144	GM12892	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:6628303..6631132-chr7:6637511..6639950,2	K562	blood:
2	chr7:6615537..6618663-chr7:6638717..6641799,3	K562	blood:
3	chr7:6627960..6631587-chr7:6636185..6643600,9	MCF-7	breast:
4	chr7:6637338..6640081-chr7:6675258..6678566,5	MCF-7	breast:
5	chr7:6629715..6632730-chr7:6637377..6639993,3	K562	blood:

Variant related genes	Relation type
C7orf26	TF binding region
ENSG00000136247	Chromatin interaction
ENSG00000205903	Chromatin interaction
ENSG00000146576	Chromatin interaction
ENSG00000232581	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58723995	0.94[AFR][1000 genomes]
rs73346969	0.89[AFR][1000 genomes]
rs73348720	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
2	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
3	nsv1028242	chr7:5819084-6645024	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
4	nsv538712	chr7:5819084-6645024	Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
5	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
6	nsv1020236	chr7:6248930-6690377	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv830895	chr7:6514781-6722092	Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
8	nsv887429	chr7:6520676-6659509	Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
9	nsv887430	chr7:6520676-6668027	Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
10	nsv508444	chr7:6534110-6700527	Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
11	nsv1025220	chr7:6534278-6736802	Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
12	nsv538717	chr7:6534278-6736802	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
13	nsv887431	chr7:6535517-6690240	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
14	nsv515978	chr7:6535517-6698905	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
15	nsv887432	chr7:6535517-6713985	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
16	nsv887433	chr7:6557135-6668027	Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
17	nsv887434	chr7:6557135-6713985	Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
18	nsv606001	chr7:6563109-6683454	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
19	nsv606002	chr7:6567114-6713985	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
20	nsv887435	chr7:6613604-6713985	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
21	nsv824002	chr7:6618087-6716961	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
22	nsv824003	chr7:6620920-6721409	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
23	nsv887436	chr7:6626922-6721661	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
24	esv1797143	chr7:6628177-6705439	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
25	nsv606003	chr7:6628242-6713985	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6630600-6641800	Weak transcription	NHDF-Ad	bronchial
2	chr7:6630800-6639800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:6630800-6641600	Weak transcription	K562	blood
4	chr7:6631000-6646200	Strong transcription	Brain Anterior Caudate	brain
5	chr7:6631000-6646800	Strong transcription	Fetal Intestine Large	intestine
6	chr7:6631200-6642600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr7:6631200-6644200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr7:6631200-6644600	Strong transcription	Fetal Lung	lung
9	chr7:6631200-6648200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:6631200-6648400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:6631200-6648400	Strong transcription	Placenta	Placenta
12	chr7:6631200-6648600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:6631200-6649200	Strong transcription	Fetal Muscle Leg	muscle
14	chr7:6631200-6649200	Strong transcription	Fetal Thymus	thymus
15	chr7:6631200-6649400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:6631200-6649400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:6631200-6649400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:6631200-6649400	Strong transcription	Fetal Muscle Trunk	muscle
19	chr7:6631400-6640000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:6631400-6640200	Strong transcription	Brain Substantia Nigra	brain
21	chr7:6631400-6641800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:6631400-6641800	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr7:6631400-6642400	Strong transcription	Left Ventricle	heart
24	chr7:6631400-6642800	Strong transcription	Brain Hippocampus Middle	brain
25	chr7:6631400-6644600	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:6631400-6647600	Weak transcription	Stomach Mucosa	stomach
27	chr7:6631400-6648400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:6631400-6649000	Strong transcription	Brain Inferior Temporal Lobe	brain
29	chr7:6631400-6649400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:6631400-6649400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr7:6631400-6649600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:6631400-6649600	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr7:6631400-6649800	Strong transcription	Fetal Intestine Small	intestine
34	chr7:6631400-6649800	Strong transcription	Fetal Stomach	stomach
35	chr7:6631600-6640800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr7:6631600-6642000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr7:6631600-6645000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr7:6631600-6647200	Strong transcription	Primary B cells from peripheral blood	blood
39	chr7:6631600-6648400	Strong transcription	Duodenum Mucosa	Duodenum
40	chr7:6631600-6648800	Strong transcription	Lung	lung
41	chr7:6631600-6649400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr7:6631600-6649400	Strong transcription	Liver	Liver
43	chr7:6631600-6650800	Strong transcription	Thymus	Thymus
44	chr7:6631800-6648800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr7:6631800-6649200	Strong transcription	Dnd41	blood
46	chr7:6632000-6642000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr7:6632000-6642600	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr7:6632000-6644800	Strong transcription	Ovary	ovary
49	chr7:6632000-6646200	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr7:6632000-6648800	Strong transcription	Sigmoid Colon	Sigmoid Colon

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