Variant report

Variant	rs35536828
Chromosome Location	chr2:11283005-11283006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11281751..11284886-chr2:11297524..11300399,3	MCF-7	breast:
2	chr2:11279189..11280977-chr2:11281694..11283761,2	K562	blood:
3	chr2:11277122..11279179-chr2:11280826..11283143,2	MCF-7	breast:
4	chr2:11281678..11284392-chr2:11293248..11297340,4	K562	blood:

Variant related genes	Relation type
ENSG00000162976	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10929723	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10929724	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12612929	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12615623	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12617097	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12994920	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12995564	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13000987	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13022766	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13028675	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13030385	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13031027	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34315339	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34333866	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34344767	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34722769	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4668714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4669695	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61540355	0.90[ASN][1000 genomes]
rs6744659	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6754718	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6754745	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71439048	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72785426	0.81[ASN][1000 genomes]
rs72785431	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7601782	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7605804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520789	chr2:11259067-11312224	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11273600-11294400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr2:11274000-11294600	Weak transcription	Right Atrium	heart
3	chr2:11281400-11288000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:11282600-11283200	Enhancers	Gastric	stomach

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