Variant report

Variant	rs35553664
Chromosome Location	chr1:220689228-220689229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1073460	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10779408	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10779409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11118563	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12048541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12753927	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12758833	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17007855	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17007885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1933002	0.90[EUR][1000 genomes]
rs2253641	0.88[EUR][1000 genomes]
rs2589578	0.90[EUR][1000 genomes]
rs2589588	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2786601	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2786604	0.87[EUR][1000 genomes]
rs2786607	0.88[EUR][1000 genomes]
rs2786609	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2786610	0.82[AMR][1000 genomes]
rs2786613	0.90[EUR][1000 genomes]
rs2786619	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2889928	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2993209	0.86[EUR][1000 genomes]
rs2994527	0.80[EUR][1000 genomes]
rs35287074	0.85[AMR][1000 genomes]
rs35327085	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3753873	0.85[AMR][1000 genomes]
rs4011894	0.83[EUR][1000 genomes]
rs7532064	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9431262	0.90[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220683200-220689800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:220685200-220689400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:220685800-220689400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:220687200-220691000	Enhancers	HMEC	breast
5	chr1:220687400-220690400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:220687400-220691000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:220688400-220690600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:220688800-220689400	Flanking Active TSS	NHEK	skin
9	chr1:220688800-220690400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr1:220689000-220690000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr1:220689000-220690200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr1:220689000-220690200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr1:220689200-220689400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr1:220689200-220689400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:220689200-220689800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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