Variant report

Variant	rs35561084
Chromosome Location	chr4:100572182-100572183
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100567291..100570372-chr4:100571961..100574906,3	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11097666	0.83[EUR][1000 genomes]
rs13107620	0.85[AMR][1000 genomes]
rs13121590	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13129571	0.80[EUR][1000 genomes]
rs13135675	0.90[EUR][1000 genomes]
rs13135826	0.83[EUR][1000 genomes]
rs13142452	0.90[EUR][1000 genomes]
rs13146743	0.96[AFR][1000 genomes]
rs13151234	0.83[EUR][1000 genomes]
rs1491236	0.87[EUR][1000 genomes]
rs17029189	0.90[EUR][1000 genomes]
rs17029211	0.90[EUR][1000 genomes]
rs17029213	0.90[EUR][1000 genomes]
rs17029215	0.90[EUR][1000 genomes]
rs17029260	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17029263	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17029264	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17029267	1.00[AFR][1000 genomes]
rs34066136	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34135026	0.83[EUR][1000 genomes]
rs34246356	0.83[EUR][1000 genomes]
rs34678000	0.90[EUR][1000 genomes]
rs34734558	0.90[EUR][1000 genomes]
rs34756677	0.90[EUR][1000 genomes]
rs34777713	0.81[EUR][1000 genomes]
rs34870956	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34874297	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35074439	0.83[EUR][1000 genomes]
rs35189300	0.87[EUR][1000 genomes]
rs35391161	0.90[EUR][1000 genomes]
rs35402611	0.80[EUR][1000 genomes]
rs35595171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35661838	0.87[EUR][1000 genomes]
rs35824615	0.90[EUR][1000 genomes]
rs35826214	0.87[EUR][1000 genomes]
rs35992230	0.83[EUR][1000 genomes]
rs41275719	0.90[EUR][1000 genomes]
rs6532821	0.83[EUR][1000 genomes]
rs6825904	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6830456	0.84[AFR][1000 genomes]
rs6851824	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71612697	0.83[EUR][1000 genomes]
rs71612700	0.83[EUR][1000 genomes]
rs71612702	0.90[EUR][1000 genomes]
rs71614603	0.90[EUR][1000 genomes]
rs71614604	0.87[EUR][1000 genomes]
rs71614605	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71614609	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71619723	0.90[EUR][1000 genomes]
rs7665414	0.90[EUR][1000 genomes]
rs7667001	0.83[EUR][1000 genomes]
rs7667218	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7688278	0.83[EUR][1000 genomes]
rs7695727	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs871320	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100566600-100575800	Weak transcription	Fetal Heart	heart
2	chr4:100567800-100579200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr4:100568600-100575000	Active TSS	HSMMtube	muscle
4	chr4:100569400-100574800	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
5	chr4:100570000-100572800	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
6	chr4:100570000-100573200	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
7	chr4:100570200-100575600	Weak transcription	Left Ventricle	heart
8	chr4:100570200-100576200	Weak transcription	Fetal Lung	lung
9	chr4:100570800-100572600	Active TSS	Right Ventricle	heart
10	chr4:100570800-100572800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:100570800-100575400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:100571000-100576000	Active TSS	Psoas Muscle	Psoas
13	chr4:100571000-100576200	Weak transcription	Brain Anterior Caudate	brain
14	chr4:100571600-100574200	Weak transcription	Ovary	ovary
15	chr4:100572000-100575800	Flanking Active TSS	Fetal Muscle Trunk	muscle

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