Variant report

Variant	rs35568430
Chromosome Location	chr3:46455541-46455542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46454231..46455815-chr3:46459560..46462072,2	K562	blood:
2	chr3:46447193..46451507-chr3:46453329..46458994,6	K562	blood:

Variant related genes	Relation type
ENSG00000223552	Chromatin interaction
ENSG00000121797	Chromatin interaction

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs11574430	1.00[ASN][1000 genomes]
rs11574436	1.00[ASN][1000 genomes]
rs11574442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11575062	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs13065351	1.00[AFR][1000 genomes]
rs13071469	1.00[AFR][1000 genomes]
rs13073976	1.00[AFR][1000 genomes]
rs13077302	1.00[AFR][1000 genomes]
rs13078564	1.00[AFR][1000 genomes]
rs13080757	1.00[AFR][1000 genomes]
rs13093063	1.00[AFR][1000 genomes]
rs17141079	0.90[ASN][1000 genomes]
rs17141101	1.00[ASN][1000 genomes]
rs17283712	1.00[AFR][1000 genomes]
rs17284138	1.00[AFR][1000 genomes]
rs17284187	1.00[AFR][1000 genomes]
rs17285143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17715106	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17765882	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17782551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17782618	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17782636	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1894387	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1894388	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2097285	0.93[EUR][1000 genomes]
rs2157052	0.83[EUR][1000 genomes]
rs2157053	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2157055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2373245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2373250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2373251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2856762	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3091310	1.00[AFR][1000 genomes]
rs3092957	0.90[ASN][1000 genomes]
rs3092958	0.90[ASN][1000 genomes]
rs3092959	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3181038	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3204850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34024447	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs34041956	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs34073838	1.00[AFR][1000 genomes]
rs34079287	1.00[AFR][1000 genomes]
rs34106161	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs34158148	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34180919	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs34190223	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34200951	0.95[ASN][1000 genomes]
rs34203322	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34245951	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34265215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34351442	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs34363105	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs34448949	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs34455547	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34473395	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs34578126	0.86[ASN][1000 genomes]
rs34671664	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34709208	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs34883716	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34953706	0.90[ASN][1000 genomes]
rs34988015	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs34997818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35117954	1.00[AFR][1000 genomes]
rs35118578	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35148665	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs35218998	1.00[AFR][1000 genomes]
rs35260614	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35367413	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs35373513	1.00[AFR][1000 genomes]
rs35386789	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35413141	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs35438577	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs35479331	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35511592	1.00[AFR][1000 genomes]
rs35513549	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35516519	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35577626	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs35601704	0.90[ASN][1000 genomes]
rs35646896	1.00[AFR][1000 genomes]
rs35821444	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35878193	0.95[ASN][1000 genomes]
rs35883833	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35943069	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs36020695	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36030692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36052732	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs36078103	1.00[AFR][1000 genomes]
rs3749461	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3918354	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3918362	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3918365	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4473594	1.00[AFR][1000 genomes]
rs6777875	0.90[ASN][1000 genomes]
rs6806951	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71327048	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs71327052	0.90[ASN][1000 genomes]
rs71327053	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs71327054	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs71327055	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs71327056	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs71327057	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs71327059	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71327061	0.90[ASN][1000 genomes]
rs71327062	0.95[ASN][1000 genomes]
rs71327063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71327065	0.86[ASN][1000 genomes]
rs71615445	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9714000	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46438800-46459800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:46448600-46460000	Weak transcription	Gastric	stomach
3	chr3:46449600-46457600	Weak transcription	Primary B cells from cord blood	blood
4	chr3:46450000-46457600	Weak transcription	Stomach Mucosa	stomach
5	chr3:46450000-46457800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr3:46450200-46456800	Weak transcription	Fetal Intestine Large	intestine
7	chr3:46450200-46457400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr3:46450200-46457600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:46450600-46457000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr3:46451000-46457600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr3:46451600-46458400	Enhancers	Fetal Heart	heart
12	chr3:46451800-46456800	Weak transcription	Fetal Intestine Small	intestine
13	chr3:46452600-46456800	Weak transcription	Spleen	Spleen
14	chr3:46452800-46456400	Weak transcription	Lung	lung
15	chr3:46452800-46457400	Weak transcription	Left Ventricle	heart
16	chr3:46453600-46455800	Enhancers	Primary hematopoietic stem cells	blood
17	chr3:46453600-46456200	Enhancers	Fetal Thymus	thymus
18	chr3:46453800-46455800	Enhancers	Adipose Nuclei	Adipose
19	chr3:46453800-46456000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr3:46453800-46456000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:46454200-46457400	Weak transcription	Small Intestine	intestine
22	chr3:46454400-46455600	Weak transcription	Right Atrium	heart
23	chr3:46454400-46457400	Weak transcription	Right Ventricle	heart
24	chr3:46454400-46457600	Weak transcription	Psoas Muscle	Psoas
25	chr3:46454400-46457800	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr3:46454600-46455800	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr3:46454600-46456800	Weak transcription	K562	blood
28	chr3:46454600-46457400	Weak transcription	Fetal Lung	lung
29	chr3:46454600-46457400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr3:46454600-46457400	Weak transcription	Thymus	Thymus
31	chr3:46454600-46458000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr3:46454800-46457400	Weak transcription	Dnd41	blood
33	chr3:46454800-46457600	Weak transcription	Primary T cells from cord blood	blood
34	chr3:46455000-46455800	Enhancers	Placenta	Placenta
35	chr3:46455000-46455800	Enhancers	HUVEC	blood vessel
36	chr3:46455400-46455800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:46455400-46457600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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