Variant report
| Variant | rs35576618 |
|---|---|
| Chromosome Location | chr14:37490875-37490876 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:37489207..37490947-chr14:37492261..37494001,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:42)
| rs_ID | r2[population] |
|---|---|
| rs1012198 | 1.00[CEU][hapmap] |
| rs10134406 | 1.00[CEU][hapmap] |
| rs10141752 | 1.00[CEU][hapmap] |
| rs10220604 | 1.00[CEU][hapmap] |
| rs1057564 | 1.00[CEU][hapmap] |
| rs17106209 | 1.00[CEU][hapmap] |
| rs17106216 | 1.00[CEU][hapmap] |
| rs17106493 | 1.00[GIH][hapmap] |
| rs17178484 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs17178639 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs17178764 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs17767344 | 1.00[LWK][hapmap] |
| rs17767749 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs17767929 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs17841015 | 1.00[CEU][hapmap] |
| rs1884775 | 1.00[CEU][hapmap] |
| rs1950372 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs1950814 | 1.00[CEU][hapmap] |
| rs1955758 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs1956423 | 1.00[CEU][hapmap] |
| rs1956424 | 1.00[CEU][hapmap] |
| rs2038309 | 1.00[CEU][hapmap];1.00[GIH][hapmap] |
| rs2415373 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs2415379 | 1.00[CEU][hapmap] |
| rs2415380 | 1.00[CEU][hapmap] |
| rs2415386 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs6571781 | 1.00[CEU][hapmap] |
| rs6571783 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs6571785 | 1.00[CEU][hapmap] |
| rs6571786 | 1.00[CEU][hapmap];1.00[GIH][hapmap] |
| rs6571788 | 1.00[CEU][hapmap] |
| rs712349 | 1.00[LWK][hapmap] |
| rs7142723 | 0.81[EUR][1000 genomes] |
| rs7151524 | 1.00[CEU][hapmap] |
| rs7159967 | 0.81[EUR][1000 genomes] |
| rs725243 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs8009630 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs8012664 | 1.00[CEU][hapmap] |
| rs8014610 | 0.81[EUR][1000 genomes] |
| rs8017826 | 1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs8019489 | 1.00[CEU][hapmap] |
| rs976171 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534288 | chr14:37254539-37697745 | Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
