Variant report

Variant	rs35590911
Chromosome Location	chr8:48895044-48895045
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10093943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10095249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10097429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11987748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11998483	0.96[AFR][1000 genomes]
rs17287711	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28488251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28542480	1.00[AFR][1000 genomes]
rs28699569	0.90[AFR][1000 genomes]
rs28701667	0.91[AFR][1000 genomes]
rs28719542	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28751111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28812773	0.83[AFR][1000 genomes]
rs6473874	0.87[AFR][1000 genomes]
rs6982203	0.91[AFR][1000 genomes]
rs6984595	0.90[AFR][1000 genomes]
rs7002719	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819424	0.87[AFR][1000 genomes]
rs7828134	0.83[AFR][1000 genomes]
rs7839604	0.83[AFR][1000 genomes]
rs7841307	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8177999	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8178024	0.91[AFR][1000 genomes]
rs8178037	0.96[AFR][1000 genomes]
rs8178117	0.87[AFR][1000 genomes]
rs8178176	0.85[AFR][1000 genomes]
rs8178185	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931032	chr8:48744329-49091359	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2758156	chr8:48788293-49008014	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv2759611	chr8:48788293-49008014	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv427820	chr8:48788293-49008014	Strong transcription Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv831309	chr8:48815290-48977856	Strong transcription Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv1033760	chr8:48852925-48961374	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv1020619	chr8:48871586-48932988	Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv1032750	chr8:48877179-48924828	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:48874800-48905800	Weak transcription	Stomach Mucosa	stomach
2	chr8:48875000-48898800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:48889800-48901600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:48889800-48901600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:48890200-48902000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:48890200-48909400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr8:48890400-48895600	Weak transcription	Liver	Liver
8	chr8:48890400-48895600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr8:48890400-48896200	Weak transcription	Thymus	Thymus
10	chr8:48890400-48896200	Weak transcription	K562	blood
11	chr8:48890400-48896400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:48890400-48901400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:48890400-48901600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr8:48890400-48901600	Weak transcription	Fetal Intestine Large	intestine
15	chr8:48890400-48909600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr8:48890600-48905200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:48890800-48895800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr8:48890800-48900000	Weak transcription	Placenta	Placenta
19	chr8:48891400-48897800	Weak transcription	NH-A	brain
20	chr8:48891400-48901800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr8:48891400-48905400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr8:48891600-48901800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr8:48891600-48910000	Weak transcription	Fetal Stomach	stomach
24	chr8:48891800-48901600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr8:48891800-48905400	Weak transcription	Fetal Intestine Small	intestine
26	chr8:48892000-48901600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr8:48892000-48901600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr8:48892000-48901800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr8:48892200-48898600	Weak transcription	Right Atrium	heart
30	chr8:48892200-48901600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr8:48892200-48901600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr8:48892200-48905400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr8:48892600-48901600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:48892600-48901600	Weak transcription	Fetal Thymus	thymus
35	chr8:48895000-48895600	Enhancers	HepG2	liver

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