Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:24343478..24345058-chr18:24348916..24351350,2	MCF-7	breast:
2	chr18:24235100..24236617-chr18:24342892..24344765,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260372	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11659207	1.00[AFR][1000 genomes]
rs11659904	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11659906	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11661270	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11663064	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12954845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12965167	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12970160	1.00[AFR][1000 genomes]
rs17611328	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17684326	1.00[AFR][1000 genomes]
rs34047317	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34315959	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34775621	1.00[AFR][1000 genomes]
rs34791772	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34909051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35531875	1.00[AFR][1000 genomes]
rs66522730	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66950491	1.00[AFR][1000 genomes]
rs66985226	1.00[AFR][1000 genomes]
rs67384004	1.00[AFR][1000 genomes]
rs67918306	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71352701	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761995	chr18:24214286-24502570	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24342000-24344400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:24343400-24345800	Enhancers	Liver	Liver
3	chr18:24343600-24345200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr18:24343600-24345600	Enhancers	Placenta	Placenta
5	chr18:24343800-24345200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr18:24344000-24344600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr18:24344000-24344600	Enhancers	A549	lung
8	chr18:24344000-24345400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr18:24344000-24346800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr18:24344200-24344400	Weak transcription	Esophagus	oesophagus
11	chr18:24344200-24345000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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