Variant report

Variant rs35613378
Chromosome Location chr9:555140-555141
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:546600-557000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr9:546600-569400 Weak transcription Esophagus oesophagus
3 chr9:547200-557800 Weak transcription Placenta Placenta
4 chr9:547400-557600 Weak transcription H1 Cell Line embryonic stem cell
5 chr9:547600-557600 Weak transcription HUES64 Cell Line embryonic stem cell
6 chr9:547600-571200 Weak transcription Aorta Aorta
7 chr9:547800-556400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr9:547800-556800 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr9:547800-563000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr9:548200-560400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
11 chr9:549600-557600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
12 chr9:549600-557800 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr9:549800-557800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr9:549800-558000 Weak transcription Brain Angular Gyrus brain
15 chr9:549800-569000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
16 chr9:549800-593800 Weak transcription Lung lung
17 chr9:550000-555800 Weak transcription Stomach Smooth Muscle stomach
18 chr9:550200-556400 Weak transcription Fetal Intestine Large intestine
19 chr9:550200-562400 Weak transcription Fetal Intestine Small intestine
20 chr9:550400-556400 Weak transcription Stomach Mucosa stomach
21 chr9:550600-555200 Weak transcription Gastric stomach
22 chr9:550800-562600 Weak transcription Rectal Mucosa Donor 31 rectum
23 chr9:551600-557400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr9:552200-557000 Enhancers Breast Myoepithelial Primary Cells Breast
25 chr9:552200-557600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr9:552200-557800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
27 chr9:552400-560400 Weak transcription Brain Cingulate Gyrus brain
28 chr9:552400-560800 Weak transcription Brain Inferior Temporal Lobe brain
29 chr9:552400-565400 Weak transcription Fetal Muscle Leg muscle
30 chr9:552400-574000 Weak transcription Right Ventricle heart
31 chr9:552800-560400 Weak transcription Cortex derived primary cultured neurospheres brain
32 chr9:552800-560800 Weak transcription Brain Anterior Caudate brain
33 chr9:553000-556800 Weak transcription Right Atrium heart
34 chr9:553000-562400 Weak transcription Brain Substantia Nigra brain
35 chr9:553200-555800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr9:553200-561000 Weak transcription Fetal Lung lung
37 chr9:553200-564800 Weak transcription Fetal Muscle Trunk muscle
38 chr9:554800-555400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr9:554800-555600 Genic enhancers A549 lung
40 chr9:554800-556400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr9:555000-555200 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr9:555000-555400 Enhancers Colonic Mucosa Colon
43 chr9:555000-555400 Genic enhancers Left Ventricle heart
44 chr9:555000-555400 Enhancers Sigmoid Colon Sigmoid Colon
45 chr9:555000-555600 Enhancers Fetal Heart heart
46 chr9:555000-555800 Enhancers Brain Hippocampus Middle brain
47 chr9:555000-555800 Enhancers HMEC breast
48 chr9:555000-556000 Flanking Active TSS NHEK skin
49 chr9:555000-568400 Weak transcription Pancreas Pancrea

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