Variant report

Variant	rs35615554
Chromosome Location	chr1:71328402-71328403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71323872..71326494-chr1:71327391..71329274,2	K562	blood:
2	chr1:71326560..71329237-chr1:71329964..71332164,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10889891	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10889892	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11209705	0.96[ASN][1000 genomes]
rs11803673	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11810467	0.96[ASN][1000 genomes]
rs12026099	0.92[ASN][1000 genomes]
rs12026456	0.96[ASN][1000 genomes]
rs12034333	0.93[ASN][1000 genomes]
rs12040186	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12049445	0.96[ASN][1000 genomes]
rs12049500	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1335002	0.81[ASN][1000 genomes]
rs1591386	0.83[ASN][1000 genomes]
rs17131473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17131476	0.88[ASN][1000 genomes]
rs17131485	0.92[ASN][1000 genomes]
rs1889598	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1932050	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2068652	0.92[ASN][1000 genomes]
rs2152121	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2152122	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2152123	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2782768	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2782769	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2782770	0.83[ASN][1000 genomes]
rs2782771	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2782772	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2820540	1.00[EUR][1000 genomes]
rs2820541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2820542	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34087524	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34745168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36021131	0.92[ASN][1000 genomes]
rs55884889	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6661453	0.92[ASN][1000 genomes]
rs6684573	0.88[ASN][1000 genomes]
rs74086786	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74086973	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74086974	0.93[ASN][1000 genomes]
rs74086976	0.93[ASN][1000 genomes]
rs74086980	0.93[ASN][1000 genomes]
rs74086985	0.88[ASN][1000 genomes]
rs74086993	0.88[ASN][1000 genomes]
rs915220	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830148	chr1:71310366-71483932	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71327600-71328600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:71328000-71330800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:71328400-71330400	Enhancers	Adipose Nuclei	Adipose
4	chr1:71328400-71331000	Enhancers	NHDF-Ad	bronchial

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