Variant report

Variant	rs35617918
Chromosome Location	chr2:37792715-37792716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37791325..37795155-chr2:37795900..37799036,5	K562	blood:
2	chr2:37786608..37790547-chr2:37791244..37795872,7	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10168778	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10173816	0.84[EUR][1000 genomes]
rs10176881	0.86[EUR][1000 genomes]
rs10181174	0.97[EUR][1000 genomes]
rs11124590	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11124592	0.97[ASN][1000 genomes]
rs11887848	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11888402	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11895388	0.94[EUR][1000 genomes]
rs12612951	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12615363	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13432740	0.81[EUR][1000 genomes]
rs34752978	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35422160	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35574342	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4670208	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4670730	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6708088	0.84[EUR][1000 genomes]
rs6710371	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6712065	0.86[EUR][1000 genomes]
rs740992	0.84[EUR][1000 genomes]
rs7560890	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37783400-37795600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr2:37787600-37793400	Enhancers	NHDF-Ad	bronchial
3	chr2:37788400-37794800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:37789200-37793400	Weak transcription	Adipose Nuclei	Adipose
5	chr2:37789200-37794400	Weak transcription	Psoas Muscle	Psoas
6	chr2:37789200-37795800	Weak transcription	Left Ventricle	heart
7	chr2:37789200-37796800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr2:37789400-37793600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr2:37789400-37795600	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr2:37789400-37795600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr2:37789600-37792800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:37789600-37793800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr2:37789600-37795800	Weak transcription	Fetal Brain Male	brain
14	chr2:37790000-37793600	Weak transcription	HMEC	breast
15	chr2:37790400-37793400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:37790400-37797000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr2:37790400-37797800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr2:37790800-37793400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:37790800-37793400	Weak transcription	HSMMtube	muscle
20	chr2:37790800-37793800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr2:37791000-37793400	Weak transcription	HUVEC	blood vessel
22	chr2:37791000-37794000	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr2:37791200-37794000	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr2:37791200-37795600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr2:37791200-37795800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr2:37791200-37796600	Weak transcription	Hela-S3	cervix
27	chr2:37791400-37793400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr2:37791600-37793600	Weak transcription	HSMM	muscle
29	chr2:37791600-37797000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr2:37791800-37792800	Weak transcription	NH-A	brain
31	chr2:37791800-37793600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr2:37792000-37793200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr2:37792000-37793200	Weak transcription	K562	blood
34	chr2:37792000-37793400	Weak transcription	NHLF	lung
35	chr2:37792400-37796400	Weak transcription	Pancreas	Pancrea
36	chr2:37792600-37792800	Enhancers	Osteobl	bone

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