Variant report

Variant	rs35620536
Chromosome Location	chr19:42906267-42906268
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:42900819..42903655-chr19:42904775..42907143,2	MCF-7	breast:
2	chr19:42904315..42908218-chr19:42909528..42916555,10	K562	blood:
3	chr19:42829022..42830328-chr19:42905348..42906313,3	MCF-7	breast:
4	chr19:42900633..42903687-chr19:42904617..42908034,6	MCF-7	breast:
5	chr19:42904602..42907517-chr19:42908247..42910710,2	MCF-7	breast:
6	chr19:42583843..42585623-chr19:42905148..42907036,2	MCF-7	breast:
7	chr19:42786293..42789026-chr19:42903312..42906811,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000079435	Chromatin interaction
ENSG00000079432	Chromatin interaction
ENSG00000268525	Chromatin interaction
ENSG00000105429	Chromatin interaction
ENSG00000213904	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10403246	1.00[AMR][1000 genomes]
rs10406755	1.00[AMR][1000 genomes]
rs10408141	1.00[AMR][1000 genomes]
rs10412954	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10414056	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10414620	0.85[AFR][1000 genomes]
rs10415478	1.00[AMR][1000 genomes]
rs10416241	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10418493	1.00[AMR][1000 genomes]
rs10419013	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10421026	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10425883	1.00[AMR][1000 genomes]
rs13345986	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28393692	1.00[AMR][1000 genomes]
rs28532592	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28572784	0.86[AFR][1000 genomes]
rs6509012	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7257090	1.00[AMR][1000 genomes]
rs73552850	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv520239	chr19:42357455-42931004	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv911782	chr19:42514712-42931004	Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
4	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
5	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
6	nsv911785	chr19:42741124-42917545	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
7	nsv911788	chr19:42887492-42930652	Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv911789	chr19:42901430-42906725	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv911790	chr19:42901430-42908074	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv911791	chr19:42901430-42909478	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv911792	chr19:42901430-42929254	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv911793	chr19:42901430-42929502	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
13	nsv911794	chr19:42901430-42930652	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
14	nsv911795	chr19:42901430-42932699	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
15	nsv579630	chr19:42904238-42906383	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
16	nsv911796	chr19:42904388-42906914	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
17	nsv579631	chr19:42904653-42906741	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
18	nsv911797	chr19:42904653-42906914	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
19	nsv579632	chr19:42904653-42912403	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
20	nsv911798	chr19:42904653-42930652	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
21	nsv911799	chr19:42905645-42930652	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42904800-42906800	Enhancers	Fetal Heart	heart
2	chr19:42905000-42906600	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr19:42905000-42907000	Active TSS	H9 Cell Line	embryonic stem cell
4	chr19:42905000-42907000	Enhancers	Spleen	Spleen
5	chr19:42905200-42906400	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr19:42905200-42906400	Enhancers	Stomach Mucosa	stomach
7	chr19:42905200-42906600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr19:42905200-42906600	Active TSS	Fetal Kidney	kidney
9	chr19:42905200-42906800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr19:42905200-42906800	Active TSS	A549	lung
11	chr19:42905200-42907000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr19:42905400-42906400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr19:42905400-42906400	Active TSS	Fetal Lung	lung
14	chr19:42905400-42906400	Flanking Active TSS	Dnd41	blood
15	chr19:42905400-42906400	Active TSS	HSMM	muscle
16	chr19:42905400-42906600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr19:42905400-42906600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr19:42905400-42906600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
19	chr19:42905400-42906600	Active TSS	Fetal Brain Female	brain
20	chr19:42905400-42906600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
21	chr19:42905400-42906800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr19:42905400-42906800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr19:42905400-42906800	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr19:42905400-42907000	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr19:42905400-42907000	Active TSS	Rectal Smooth Muscle	rectum
26	chr19:42905600-42906400	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr19:42905600-42906400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr19:42905600-42906400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
29	chr19:42905600-42906400	Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr19:42905600-42906400	Flanking Active TSS	Primary B cells from cord blood	blood
31	chr19:42905600-42906400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
32	chr19:42905600-42906400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr19:42905600-42906400	Active TSS	Muscle Satellite Cultured Cells	--
34	chr19:42905600-42906400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr19:42905600-42906400	Flanking Active TSS	Colonic Mucosa	Colon
36	chr19:42905600-42906400	Active TSS	Fetal Brain Male	brain
37	chr19:42905600-42906400	Active TSS	Placenta Amnion	Placenta Amnion
38	chr19:42905600-42906400	Active TSS	Psoas Muscle	Psoas
39	chr19:42905600-42906400	Active TSS	Rectal Mucosa Donor 31	rectum
40	chr19:42905600-42906400	Active TSS	Right Atrium	heart
41	chr19:42905600-42906400	Active TSS	Right Ventricle	heart
42	chr19:42905600-42906400	Bivalent/Poised TSS	HepG2	liver
43	chr19:42905600-42906400	Flanking Active TSS	HMEC	breast
44	chr19:42905600-42906400	Active TSS	HSMMtube	muscle
45	chr19:42905600-42906400	Active TSS	NHDF-Ad	bronchial
46	chr19:42905600-42906400	Active TSS	NHLF	lung
47	chr19:42905600-42906600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr19:42905600-42906600	Active TSS	HUES48 Cell Line	embryonic stem cell
49	chr19:42905600-42906600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr19:42905600-42906600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links