Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10779227	0.83[AFR][1000 genomes]
rs10863107	1.00[ASN][1000 genomes]
rs11117088	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11117093	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11117105	1.00[ASN][1000 genomes]
rs11117106	1.00[ASN][1000 genomes]
rs11608371	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11611607	0.91[AFR][1000 genomes]
rs17348032	1.00[ASN][1000 genomes]
rs1847206	0.83[AFR][1000 genomes]
rs34315119	1.00[ASN][1000 genomes]
rs34664635	1.00[ASN][1000 genomes]
rs61929393	1.00[AFR][1000 genomes]
rs61929399	0.91[AFR][1000 genomes]
rs61929424	0.91[AFR][1000 genomes]
rs61931120	0.80[AFR][1000 genomes]
rs61931121	0.80[AFR][1000 genomes]
rs6539944	0.80[AFR][1000 genomes]
rs728753	1.00[ASN][1000 genomes]
rs73177154	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73177156	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73177179	1.00[AFR][1000 genomes]
rs73177184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187656	0.81[EUR][1000 genomes]
rs73187675	0.81[EUR][1000 genomes]
rs7485871	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7958003	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7961367	0.83[AFR][1000 genomes]
rs7971447	0.83[AFR][1000 genomes]
rs9738989	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv559667	chr12:86318004-86416212	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86318600-86324600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr12:86318800-86319400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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