Variant report

Variant	rs35634098
Chromosome Location	chr13:76419522-76419523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12854177	1.00[AFR][1000 genomes]
rs12871455	0.92[EUR][1000 genomes]
rs12871896	1.00[AFR][1000 genomes]
rs12873882	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34258592	1.00[AFR][1000 genomes]
rs34890868	1.00[AFR][1000 genomes]
rs35138645	1.00[AFR][1000 genomes]
rs71434806	1.00[AFR][1000 genomes]
rs71434808	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7338642	0.92[EUR][1000 genomes]
rs7982926	0.92[EUR][1000 genomes]
rs7983563	0.92[EUR][1000 genomes]
rs7989127	0.92[EUR][1000 genomes]
rs9600603	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832646	chr13:76300428-76483102	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv2758333	chr13:76321610-76542003	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2759950	chr13:76321610-76542003	Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76387800-76427200	Weak transcription	Ovary	ovary
2	chr13:76391200-76431600	Strong transcription	Hela-S3	cervix
3	chr13:76394400-76435800	Weak transcription	Colon Smooth Muscle	Colon
4	chr13:76396400-76432000	Weak transcription	Brain Substantia Nigra	brain
5	chr13:76396400-76436800	Weak transcription	Fetal Brain Male	brain
6	chr13:76399000-76433200	Weak transcription	Small Intestine	intestine
7	chr13:76399800-76433000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr13:76400800-76428400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr13:76406000-76428600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:76406000-76429600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr13:76406000-76430600	Strong transcription	Osteobl	bone
12	chr13:76406000-76436800	Strong transcription	Muscle Satellite Cultured Cells	--
13	chr13:76406600-76435000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr13:76406800-76427800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:76408400-76435000	Strong transcription	HSMMtube	muscle
16	chr13:76408400-76435200	Strong transcription	NH-A	brain
17	chr13:76410200-76419600	Strong transcription	Fetal Intestine Large	intestine
18	chr13:76411000-76420600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr13:76412800-76419800	Strong transcription	HepG2	liver
20	chr13:76412800-76420200	Strong transcription	Duodenum Mucosa	Duodenum
21	chr13:76413200-76436800	Strong transcription	NHDF-Ad	bronchial
22	chr13:76413800-76437600	Strong transcription	HSMM	muscle
23	chr13:76414000-76433000	Strong transcription	Liver	Liver
24	chr13:76414200-76420400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr13:76414200-76433400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr13:76414400-76426200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr13:76414400-76435200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr13:76414600-76420200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr13:76414800-76425400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr13:76415400-76429200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr13:76415600-76421000	Strong transcription	Placenta Amnion	Placenta Amnion
32	chr13:76416000-76426800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr13:76416400-76425000	Weak transcription	Esophagus	oesophagus
34	chr13:76416400-76425200	Weak transcription	Lung	lung
35	chr13:76416400-76434600	Weak transcription	Spleen	Spleen
36	chr13:76416600-76423200	Weak transcription	Brain Germinal Matrix	brain
37	chr13:76416600-76423200	Weak transcription	Colonic Mucosa	Colon
38	chr13:76416600-76426400	Weak transcription	HUVEC	blood vessel
39	chr13:76416600-76429800	Weak transcription	Stomach Mucosa	stomach
40	chr13:76417200-76427200	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr13:76417200-76427200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr13:76417400-76423400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr13:76417400-76427400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr13:76417400-76429200	Weak transcription	Adipose Nuclei	Adipose
45	chr13:76417400-76431000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr13:76417400-76433000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr13:76417400-76434600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr13:76417400-76443800	Weak transcription	Fetal Brain Female	brain
49	chr13:76417600-76419800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr13:76417600-76421600	Weak transcription	Fetal Kidney	kidney

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