Variant report

Variant	rs35650630
Chromosome Location	chr14:97103665-97103666
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:97098302..97100960-chr14:97102875..97104630,2	K562	blood:
2	chr14:97096962..97100936-chr14:97101885..97104048,3	K562	blood:
3	chr14:97091981..97093780-chr14:97101556..97103907,3	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1041010	1.00[ASN][1000 genomes]
rs11621451	1.00[ASN][1000 genomes]
rs11622413	1.00[ASN][1000 genomes]
rs17214393	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17214407	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17214414	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17214421	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17214428	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17280338	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17280345	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1886099	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2181692	1.00[ASN][1000 genomes]
rs33997530	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35112188	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35120856	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35318409	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35666087	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35705120	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35741295	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35878456	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4900330	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4900331	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4900332	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4905511	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4905512	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4905513	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4905514	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55693722	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55708042	1.00[ASN][1000 genomes]
rs55803918	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56016038	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56034176	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56074271	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56113722	1.00[ASN][1000 genomes]
rs57236232	1.00[ASN][1000 genomes]
rs57786368	1.00[ASN][1000 genomes]
rs58570755	1.00[ASN][1000 genomes]
rs59328104	1.00[ASN][1000 genomes]
rs61979848	1.00[ASN][1000 genomes]
rs61979852	1.00[ASN][1000 genomes]
rs61979853	1.00[ASN][1000 genomes]
rs61983135	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67001160	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72708800	1.00[ASN][1000 genomes]
rs7401514	0.99[EUR][1000 genomes]
rs8011580	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042409	chr14:96832303-97115668	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv542178	chr14:96832303-97115668	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1048302	chr14:97000845-97250538	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1041078	chr14:97001679-97279220	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1050075	chr14:97004951-97279220	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv431026	chr14:97079926-97163106	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv565650	chr14:97089607-97126153	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv470663	chr14:97092803-97127431	Weak transcription Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv565651	chr14:97097653-97137681	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97101400-97115000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:97101600-97106000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr14:97102600-97103800	Weak transcription	Spleen	Spleen

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