Variant report

Variant	rs35661838
Chromosome Location	chr4:100562300-100562301
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100555988..100557489-chr4:100560382..100562904,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11097666	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13121590	0.81[EUR][1000 genomes]
rs13129571	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13135675	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13135826	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13142452	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13151234	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17029189	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17029211	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17029213	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17029215	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17029260	0.93[EUR][1000 genomes]
rs17029263	0.93[EUR][1000 genomes]
rs34135026	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34246356	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34678000	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34734558	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34756677	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34777713	0.87[EUR][1000 genomes]
rs34870956	0.93[EUR][1000 genomes]
rs34874297	0.93[EUR][1000 genomes]
rs35074439	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35189300	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35391161	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35402611	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35561084	0.87[EUR][1000 genomes]
rs35595171	0.87[EUR][1000 genomes]
rs35824615	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35826214	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35992230	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs41275719	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6532821	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6825904	0.93[EUR][1000 genomes]
rs6826436	0.83[AFR][1000 genomes]
rs6851824	0.93[EUR][1000 genomes]
rs71612697	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71612700	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71612702	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71614603	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71619723	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7665414	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7667001	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7688278	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7695727	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100553600-100563400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:100553600-100564200	Weak transcription	Left Ventricle	heart
3	chr4:100553600-100564600	Weak transcription	Psoas Muscle	Psoas
4	chr4:100556400-100563800	Weak transcription	Fetal Muscle Leg	muscle
5	chr4:100561600-100562400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:100561800-100567400	Weak transcription	HSMMtube	muscle
7	chr4:100562000-100562400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:100562000-100563000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:100562000-100563400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:100562200-100562800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:100562200-100562800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr4:100562200-100563400	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links