Variant report

Variant	rs35663899
Chromosome Location	chr10:25685872-25685873
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10508694	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741077	0.85[ASN][1000 genomes]
rs10764543	1.00[ASN][1000 genomes]
rs10828791	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828793	1.00[ASN][1000 genomes]
rs11014510	0.89[ASN][1000 genomes]
rs11014527	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014528	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11014529	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014530	1.00[ASN][1000 genomes]
rs11014533	0.86[ASN][1000 genomes]
rs1122775	0.83[ASN][1000 genomes]
rs1122776	0.83[ASN][1000 genomes]
rs11818261	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12219956	0.89[ASN][1000 genomes]
rs12240665	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249852	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251868	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251917	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12254479	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256778	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256851	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258359	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258665	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258671	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259043	1.00[ASN][1000 genomes]
rs12259696	1.00[ASN][1000 genomes]
rs12358447	1.00[ASN][1000 genomes]
rs12764320	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12766749	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1329264	0.83[ASN][1000 genomes]
rs1329265	0.83[ASN][1000 genomes]
rs1341963	0.82[ASN][1000 genomes]
rs1576317	0.83[ASN][1000 genomes]
rs1576318	0.82[ASN][1000 genomes]
rs1576320	0.83[ASN][1000 genomes]
rs1576321	0.83[ASN][1000 genomes]
rs1591249	0.83[ASN][1000 genomes]
rs1612200	0.83[ASN][1000 genomes]
rs1626372	0.83[ASN][1000 genomes]
rs1628986	0.83[ASN][1000 genomes]
rs1630323	0.83[ASN][1000 genomes]
rs1632593	0.83[ASN][1000 genomes]
rs1754253	0.83[ASN][1000 genomes]
rs1754254	0.83[ASN][1000 genomes]
rs1754255	0.83[ASN][1000 genomes]
rs1754256	0.83[ASN][1000 genomes]
rs1754258	0.83[ASN][1000 genomes]
rs1754260	0.83[ASN][1000 genomes]
rs1754264	0.83[ASN][1000 genomes]
rs1754265	0.83[ASN][1000 genomes]
rs1754268	0.83[ASN][1000 genomes]
rs1754269	0.83[ASN][1000 genomes]
rs1754271	0.82[ASN][1000 genomes]
rs1760727	0.83[ASN][1000 genomes]
rs1760728	0.83[ASN][1000 genomes]
rs1760729	0.83[ASN][1000 genomes]
rs1760730	0.83[ASN][1000 genomes]
rs1760733	0.83[ASN][1000 genomes]
rs1760734	0.83[ASN][1000 genomes]
rs1760735	0.83[ASN][1000 genomes]
rs1760762	0.84[ASN][1000 genomes]
rs1760763	0.83[ASN][1000 genomes]
rs1760764	0.83[ASN][1000 genomes]
rs1760765	0.83[ASN][1000 genomes]
rs1773607	0.83[ASN][1000 genomes]
rs1773608	0.83[ASN][1000 genomes]
rs1773609	0.83[ASN][1000 genomes]
rs1773612	0.82[ASN][1000 genomes]
rs1773614	0.83[ASN][1000 genomes]
rs1773616	0.83[ASN][1000 genomes]
rs1773618	0.83[ASN][1000 genomes]
rs1773622	0.83[ASN][1000 genomes]
rs1773623	0.83[ASN][1000 genomes]
rs1773689	0.82[ASN][1000 genomes]
rs1773690	0.82[ASN][1000 genomes]
rs35973294	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4351726	0.83[ASN][1000 genomes]
rs7090972	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091686	0.83[ASN][1000 genomes]
rs7094439	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs824590	0.83[ASN][1000 genomes]
rs824593	0.83[ASN][1000 genomes]
rs824597	0.82[ASN][1000 genomes]
rs824598	0.82[ASN][1000 genomes]
rs824599	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv550226	chr10:25653017-25693426	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25680600-25686000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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