Variant report

Variant	rs35666891
Chromosome Location	chr12:11331247-11331248
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:11326790..11329345-chr12:11330898..11332485,3	K562	blood:
2	chr12:11328230..11331736-chr12:11334279..11336008,3	MCF-7	breast:
3	chr12:11328652..11331846-chr12:11337152..11339281,3	MCF-7	breast:
4	chr12:11330504..11332010-chr12:11332108..11333745,2	K562	blood:
5	chr12:11321748..11327565-chr12:11327784..11333912,14	MCF-7	breast:
6	chr12:11326790..11329345-chr12:11330898..11332446,2	K562	blood:

Variant related genes	Relation type
ENSG00000256712	Chromatin interaction
ENSG00000256629	Chromatin interaction
ENSG00000256537	Chromatin interaction
ENSG00000111215	Chromatin interaction
ENSG00000212127	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs34576964	1.00[AFR][1000 genomes]
rs36087244	1.00[AFR][1000 genomes]
rs4506739	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758294	chr12:10969620-11714921	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv2759879	chr12:10969620-11714921	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
3	nsv1038277	chr12:11060978-11504091	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	nsv428272	chr12:11069845-11714921	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
5	nsv898783	chr12:11185236-11338781	ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv898784	chr12:11188140-11341521	Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv1050050	chr12:11192046-11436359	Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
8	nsv1053783	chr12:11203509-11495584	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
9	esv1807067	chr12:11214215-11568895	Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11325000-11335600	Weak transcription	Left Ventricle	heart
2	chr12:11325200-11332200	Weak transcription	Fetal Muscle Leg	muscle
3	chr12:11325200-11332200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr12:11325400-11331400	Weak transcription	Psoas Muscle	Psoas
5	chr12:11325400-11331800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr12:11325400-11332000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr12:11325600-11331400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr12:11325600-11332200	Weak transcription	Brain Germinal Matrix	brain
9	chr12:11325600-11334400	Weak transcription	Primary B cells from cord blood	blood
10	chr12:11325600-11338200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr12:11326000-11331800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr12:11326000-11334400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr12:11326200-11331400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr12:11326200-11331400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr12:11326200-11331600	Weak transcription	HMEC	breast
16	chr12:11326200-11331800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr12:11326200-11334600	Weak transcription	Liver	Liver
18	chr12:11326200-11338600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr12:11326400-11332000	Weak transcription	NHEK	skin
20	chr12:11326400-11334400	Weak transcription	Fetal Thymus	thymus
21	chr12:11326400-11337400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr12:11326400-11355600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr12:11328000-11338600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr12:11328600-11332200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr12:11328600-11334400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr12:11328800-11340400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr12:11329000-11331400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr12:11329200-11332000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr12:11330600-11365400	Weak transcription	Primary T cells from cord blood	blood
30	chr12:11331200-11332400	Enhancers	GM12878-XiMat	blood

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