Variant report

Variant	rs35669779
Chromosome Location	chr19:36866864-36866865
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:36866113..36867670-chr19:37018498..37020110,2	K562	blood:

Variant related genes	Relation type
ENSG00000228629	Chromatin interaction
ENSG00000254004	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12974922	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12974973	0.93[EUR][1000 genomes]
rs12975337	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12975393	0.90[EUR][1000 genomes]
rs12976232	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12979121	0.85[EUR][1000 genomes]
rs12982193	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12983243	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17639717	0.95[EUR][1000 genomes]
rs34288068	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34386841	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34656490	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34957973	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35152981	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35186959	0.95[EUR][1000 genomes]
rs35338669	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35577694	0.95[EUR][1000 genomes]
rs35778194	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35840887	0.89[EUR][1000 genomes]
rs35951452	0.95[EUR][1000 genomes]
rs36000557	0.88[EUR][1000 genomes]
rs36026111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4133047	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55825342	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71354192	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71354193	0.91[EUR][1000 genomes]
rs71354194	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71354195	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7247321	0.95[EUR][1000 genomes]
rs7256914	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7259940	0.95[EUR][1000 genomes]
rs7260462	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8109676	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8110644	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8111836	0.95[EUR][1000 genomes]
rs8113338	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36830600-36869400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:36832200-36868600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:36834200-36868800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr19:36835800-36868800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr19:36836400-36868000	Weak transcription	Psoas Muscle	Psoas
6	chr19:36838000-36868600	Weak transcription	Stomach Mucosa	stomach
7	chr19:36844200-36868800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr19:36850000-36868000	Weak transcription	Fetal Heart	heart
9	chr19:36852200-36867600	Weak transcription	HepG2	liver
10	chr19:36856600-36868400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr19:36858000-36868600	Weak transcription	Brain Substantia Nigra	brain
12	chr19:36858000-36869400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr19:36858400-36868200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr19:36858400-36868800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr19:36858400-36869400	Weak transcription	Left Ventricle	heart
16	chr19:36858600-36868600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr19:36858600-36868600	Weak transcription	Brain Anterior Caudate	brain
18	chr19:36858600-36869200	Weak transcription	Pancreas	Pancrea
19	chr19:36858600-36869200	Weak transcription	Right Ventricle	heart
20	chr19:36858800-36868600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr19:36859000-36868400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr19:36859000-36868800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr19:36859000-36868800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr19:36859000-36869000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr19:36859600-36867600	Weak transcription	Colon Smooth Muscle	Colon
26	chr19:36861600-36868800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr19:36861800-36867600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr19:36861800-36867800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr19:36861800-36868000	Weak transcription	Fetal Brain Male	brain
30	chr19:36861800-36868400	Weak transcription	Ovary	ovary
31	chr19:36861800-36868600	Weak transcription	Adipose Nuclei	Adipose
32	chr19:36861800-36868600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr19:36861800-36868600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr19:36861800-36868600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr19:36861800-36868600	Weak transcription	Thymus	Thymus
36	chr19:36861800-36868800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr19:36861800-36869000	Weak transcription	Gastric	stomach
38	chr19:36861800-36869200	Weak transcription	Aorta	Aorta
39	chr19:36862200-36869000	Weak transcription	Spleen	Spleen
40	chr19:36862800-36868600	Weak transcription	Primary B cells from peripheral blood	blood
41	chr19:36863600-36868800	ZNF genes & repeats	A549	lung
42	chr19:36863800-36868200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr19:36863800-36868200	Weak transcription	Fetal Muscle Trunk	muscle
44	chr19:36863800-36868600	Weak transcription	Fetal Kidney	kidney
45	chr19:36864000-36867800	Weak transcription	Fetal Lung	lung
46	chr19:36864000-36868200	Weak transcription	Fetal Muscle Leg	muscle
47	chr19:36864400-36867600	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr19:36864400-36868600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr19:36865000-36868600	Weak transcription	Small Intestine	intestine
50	chr19:36865200-36867600	Weak transcription	Primary B cells from cord blood	blood

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