Variant report

Variant	rs35675087
Chromosome Location	chr20:24081023-24081024
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24080843..24083360-chr20:24088770..24090295,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1160365	0.87[EUR][1000 genomes]
rs34016617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34096340	0.87[EUR][1000 genomes]
rs34097439	1.00[EUR][1000 genomes]
rs34123386	0.87[EUR][1000 genomes]
rs35671594	0.87[EUR][1000 genomes]
rs6036634	0.95[EUR][1000 genomes]
rs6036639	1.00[EUR][1000 genomes]
rs6036641	1.00[EUR][1000 genomes]
rs6036647	1.00[EUR][1000 genomes]
rs6049376	0.97[EUR][1000 genomes]
rs6049384	1.00[EUR][1000 genomes]
rs6049387	1.00[EUR][1000 genomes]
rs6049388	1.00[EUR][1000 genomes]
rs6049395	1.00[EUR][1000 genomes]
rs6132697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6132698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6132699	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6132702	0.87[EUR][1000 genomes]
rs6138198	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6138199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6138206	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6138211	0.87[EUR][1000 genomes]
rs6138213	0.87[EUR][1000 genomes]
rs62193667	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74173629	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24076200-24082800	Weak transcription	HMEC	breast
2	chr20:24077400-24081200	Weak transcription	Pancreas	Pancrea
3	chr20:24077800-24082800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr20:24078000-24081200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr20:24079200-24081400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr20:24079200-24081400	Enhancers	Osteobl	bone
7	chr20:24079200-24081800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr20:24079200-24085200	Enhancers	NHEK	skin
9	chr20:24079400-24084400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr20:24079800-24082800	Weak transcription	A549	lung
11	chr20:24080000-24081600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr20:24080000-24083200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr20:24080200-24081200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr20:24080200-24082600	Weak transcription	HUVEC	blood vessel
15	chr20:24080200-24083200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr20:24080400-24083000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr20:24080800-24081400	Enhancers	NH-A	brain
18	chr20:24081000-24081400	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr20:24081000-24081400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr20:24081000-24081600	Enhancers	Primary T cells fromperipheralblood	blood
21	chr20:24081000-24081600	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr20:24081000-24081600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr20:24081000-24083800	Weak transcription	Placenta Amnion	Placenta Amnion

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