Variant report

Variant	rs35677603
Chromosome Location	chr11:47268310-47268311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:47197588..47201043-chr11:47267472..47270431,4	MCF-7	breast:
2	chr11:47267134..47271941-chr11:47277592..47282899,11	MCF-7	breast:
3	chr11:47268303..47273264-chr11:47289525..47294481,12	K562	blood:
4	chr11:47263774..47268457-chr11:47268937..47272422,6	MCF-7	breast:
5	chr11:47263865..47272320-chr11:47288426..47294726,14	MCF-7	breast:
6	chr11:47265054..47272453-chr11:47272862..47282933,17	MCF-7	breast:
7	chr11:47201377..47203716-chr11:47267132..47269463,2	K562	blood:
8	chr11:47267881..47272421-chr11:47288787..47294481,12	K562	blood:

No data

Variant related genes	Relation type
ENSG00000110514	Chromatin interaction
ENSG00000025434	Chromatin interaction
ENSG00000149182	Chromatin interaction
ENSG00000134575	Chromatin interaction
ENSG00000256746	Chromatin interaction
ENSG00000165912	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2013867	0.82[ASN][1000 genomes]
rs2167079	0.83[ASN][1000 genomes]
rs2291119	0.85[EUR][1000 genomes]
rs326217	0.85[EUR][1000 genomes]
rs326222	0.82[ASN][1000 genomes]
rs35879051	0.83[ASN][1000 genomes]
rs59663860	0.83[ASN][1000 genomes]
rs7129661	0.84[ASN][1000 genomes]
rs901746	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv917316	chr11:47232210-47448882	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35677603	LRP4	cis	Nerve Tibial	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47238400-47269400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:47242400-47269200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:47243600-47269200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:47255400-47269200	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:47255600-47268800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:47256800-47268800	Strong transcription	Fetal Thymus	thymus
7	chr11:47258000-47269000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:47258400-47268400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:47258600-47268800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:47259000-47268800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:47259000-47269000	Strong transcription	Fetal Stomach	stomach
12	chr11:47259400-47268800	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr11:47259400-47268800	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr11:47259400-47269000	Strong transcription	Primary B cells from peripheral blood	blood
15	chr11:47259400-47269000	Strong transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:47259600-47268600	Strong transcription	Brain Inferior Temporal Lobe	brain
17	chr11:47259600-47269000	Strong transcription	Fetal Muscle Leg	muscle
18	chr11:47260000-47268600	Strong transcription	Fetal Muscle Trunk	muscle
19	chr11:47260000-47268600	Strong transcription	Skeletal Muscle Female	skeletal muscle
20	chr11:47260200-47269000	Strong transcription	Brain Substantia Nigra	brain
21	chr11:47260200-47269000	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr11:47261000-47269000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:47261400-47268800	Weak transcription	Stomach Mucosa	stomach
24	chr11:47261600-47268400	Strong transcription	Placenta	Placenta
25	chr11:47261600-47268800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr11:47261600-47269600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:47261800-47268400	Weak transcription	Right Atrium	heart
28	chr11:47261800-47268600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:47262000-47268600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:47264200-47268600	Weak transcription	Fetal Heart	heart
31	chr11:47264200-47268800	Strong transcription	Osteobl	bone
32	chr11:47264200-47269200	Weak transcription	Psoas Muscle	Psoas
33	chr11:47264400-47269000	Strong transcription	NHLF	lung
34	chr11:47264400-47269200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:47264400-47269200	Weak transcription	HSMM	muscle
36	chr11:47264600-47269800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:47264800-47269000	Weak transcription	Small Intestine	intestine
38	chr11:47265000-47268600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:47265200-47268600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr11:47265200-47268800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr11:47265400-47269000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:47265400-47269000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr11:47266000-47268600	Strong transcription	GM12878-XiMat	blood
44	chr11:47266000-47269000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:47266400-47268800	Genic enhancers	Adipose Nuclei	Adipose
46	chr11:47266400-47268800	Genic enhancers	Fetal Intestine Small	intestine
47	chr11:47266400-47269000	Genic enhancers	Fetal Intestine Large	intestine
48	chr11:47266600-47268800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr11:47266800-47268600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:47267000-47269200	Weak transcription	Fetal Brain Male	brain

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