Variant report

Variant	rs35707798
Chromosome Location	chr15:76565026-76565027
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11072580	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11072583	0.80[ASN][1000 genomes]
rs11072585	0.80[ASN][1000 genomes]
rs11072587	0.82[ASN][1000 genomes]
rs12050896	0.80[ASN][1000 genomes]
rs12438741	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12439484	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12440815	0.80[EUR][1000 genomes]
rs12442266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12592501	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12595211	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12595717	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12595738	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12898415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12901160	0.82[ASN][1000 genomes]
rs12902506	0.83[EUR][1000 genomes]
rs12907668	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12908334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12909718	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12911035	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12913096	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12916022	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1474117	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17361504	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1850722	0.82[ASN][1000 genomes]
rs2139190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2176623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2404974	0.80[ASN][1000 genomes]
rs2456045	0.84[EUR][1000 genomes]
rs2460154	0.82[EUR][1000 genomes]
rs2469541	0.90[ASN][1000 genomes]
rs2469542	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2469565	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2469566	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2959850	0.88[EUR][1000 genomes]
rs2959853	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34213321	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34893715	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3759853	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4381566	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4886484	0.83[ASN][1000 genomes]
rs4886485	0.85[ASN][1000 genomes]
rs4886789	0.80[ASN][1000 genomes]
rs55805818	0.82[ASN][1000 genomes]
rs67306087	0.91[AFR][1000 genomes]
rs67418609	0.80[EUR][1000 genomes]
rs7174889	0.91[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs869452	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs959991	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs35707798	SCAPER	cis	Artery Tibial	GTEx
rs35707798	SCAPER	cis	lung	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76550600-76578400	Strong transcription	Liver	Liver
2	chr15:76555800-76567200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:76555800-76574200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr15:76555800-76578800	Weak transcription	Psoas Muscle	Psoas
5	chr15:76555800-76579000	Weak transcription	NHLF	lung
6	chr15:76555800-76586000	Weak transcription	Stomach Mucosa	stomach
7	chr15:76556200-76565200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr15:76556200-76569800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:76556400-76581400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:76556800-76594600	Weak transcription	Esophagus	oesophagus
11	chr15:76557000-76567200	Strong transcription	Hela-S3	cervix
12	chr15:76557000-76582800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:76557600-76573400	Strong transcription	Rectal Mucosa Donor 31	rectum
14	chr15:76558000-76603000	Weak transcription	Aorta	Aorta
15	chr15:76558400-76568200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:76559600-76566600	Weak transcription	HUVEC	blood vessel
17	chr15:76560000-76565200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr15:76560000-76582400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:76560200-76565600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:76560200-76566000	Strong transcription	Fetal Stomach	stomach
21	chr15:76560200-76578600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr15:76560400-76565200	Strong transcription	Fetal Intestine Large	intestine
23	chr15:76560600-76565200	Strong transcription	Fetal Muscle Trunk	muscle
24	chr15:76560600-76565800	Strong transcription	Osteobl	bone
25	chr15:76560600-76567000	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr15:76560600-76567600	Strong transcription	A549	lung
27	chr15:76561000-76566600	Weak transcription	Gastric	stomach
28	chr15:76561000-76567600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:76561000-76567600	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr15:76561000-76567600	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr15:76561000-76569400	Weak transcription	Spleen	Spleen
32	chr15:76561000-76570400	Weak transcription	Colon Smooth Muscle	Colon
33	chr15:76561000-76574200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr15:76561000-76574800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr15:76561000-76576200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr15:76561000-76580400	Strong transcription	Adipose Nuclei	Adipose
37	chr15:76561000-76587600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr15:76561200-76566400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr15:76561200-76567800	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr15:76561200-76578400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr15:76561400-76570200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr15:76561400-76578800	Strong transcription	Duodenum Mucosa	Duodenum
43	chr15:76561600-76574200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr15:76562000-76565400	Strong transcription	Fetal Thymus	thymus
45	chr15:76562000-76573200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr15:76562000-76591600	Weak transcription	Small Intestine	intestine
47	chr15:76562400-76566800	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr15:76562600-76567000	Strong transcription	Fetal Lung	lung
49	chr15:76562600-76569400	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr15:76562600-76574600	Strong transcription	Primary monocytes fromperipheralblood	blood

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