Variant report

Variant	rs35709587
Chromosome Location	chr1:93746664-93746665
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr1:93746539-93746817	HL-60	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000229567	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11799875	1.00[EUR][1000 genomes]
rs11800464	1.00[EUR][1000 genomes]
rs11809347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1593513	1.00[EUR][1000 genomes]
rs1593514	1.00[EUR][1000 genomes]
rs1593515	1.00[EUR][1000 genomes]
rs4475764	1.00[EUR][1000 genomes]
rs56675391	1.00[EUR][1000 genomes]
rs57453256	1.00[EUR][1000 genomes]
rs58042552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58518453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58591926	1.00[EUR][1000 genomes]
rs59504501	1.00[EUR][1000 genomes]
rs60025932	1.00[EUR][1000 genomes]
rs60807198	1.00[EUR][1000 genomes]
rs60986131	1.00[EUR][1000 genomes]
rs6657187	1.00[EUR][1000 genomes]
rs72955313	1.00[EUR][1000 genomes]
rs72955332	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv946082	chr1:93741885-93761433	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93647000-93756400	Weak transcription	Gastric	stomach
2	chr1:93647200-93757600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:93692200-93787800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:93720000-93762000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr1:93728600-93751400	Weak transcription	Adipose Nuclei	Adipose
6	chr1:93728600-93754800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr1:93728600-93764400	Weak transcription	Psoas Muscle	Psoas
8	chr1:93728600-93769400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr1:93728600-93770400	Weak transcription	HSMM	muscle
10	chr1:93728800-93751600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr1:93728800-93751800	Weak transcription	Placenta	Placenta
12	chr1:93728800-93752600	Weak transcription	Brain Hippocampus Middle	brain
13	chr1:93728800-93752600	Weak transcription	Fetal Stomach	stomach
14	chr1:93728800-93753800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:93728800-93754800	Weak transcription	Ovary	ovary
16	chr1:93728800-93755000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr1:93728800-93755000	Weak transcription	Left Ventricle	heart
18	chr1:93728800-93755000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr1:93728800-93778200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr1:93729000-93790200	Weak transcription	Osteobl	bone
21	chr1:93729800-93752600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr1:93729800-93754800	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr1:93729800-93763200	Weak transcription	Pancreas	Pancrea
24	chr1:93730000-93754400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr1:93730400-93748200	Weak transcription	Fetal Thymus	thymus
26	chr1:93730400-93754600	Weak transcription	Fetal Muscle Leg	muscle
27	chr1:93730600-93752600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr1:93731000-93765400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr1:93731200-93787400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr1:93731600-93747200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr1:93731800-93752800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr1:93731800-93754200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr1:93731800-93754600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr1:93736400-93771200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr1:93739200-93755000	Weak transcription	HSMMtube	muscle
36	chr1:93739600-93754200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr1:93739600-93766600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr1:93740400-93748600	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr1:93740800-93746800	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr1:93741800-93752600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:93742000-93754400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr1:93743600-93755400	Weak transcription	Small Intestine	intestine
43	chr1:93743600-93770200	Weak transcription	Fetal Kidney	kidney
44	chr1:93744200-93753800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr1:93745200-93747000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr1:93745400-93746800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
47	chr1:93745400-93746800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr1:93745600-93747000	ZNF genes & repeats	GM12878-XiMat	blood
49	chr1:93745800-93749400	Strong transcription	Primary T cells from cord blood	blood
50	chr1:93745800-93751600	Weak transcription	Thymus	Thymus

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