Variant report

Variant	rs35711226
Chromosome Location	chr1:211523564-211523565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210546284..210547950-chr1:211520901..211523715,2	K562	blood:
2	chr1:211509631..211511913-chr1:211521959..211524748,2	K562	blood:
3	chr1:211516288..211519071-chr1:211523168..211524871,2	K562	blood:

Variant related genes	Relation type
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1046690	0.83[EUR][1000 genomes]
rs11119713	0.82[EUR][1000 genomes]
rs11803005	0.82[EUR][1000 genomes]
rs12723208	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12729996	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12743163	0.84[EUR][1000 genomes]
rs12743458	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12752670	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12754607	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12754747	0.90[AFR][1000 genomes]
rs17188916	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17188937	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17189000	0.82[EUR][1000 genomes]
rs17267491	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17267554	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17267561	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2280079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34027321	0.83[EUR][1000 genomes]
rs34140425	0.84[EUR][1000 genomes]
rs34251608	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34256746	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34440485	0.82[EUR][1000 genomes]
rs34813082	0.82[EUR][1000 genomes]
rs35228985	0.82[EUR][1000 genomes]
rs35791308	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3738200	0.83[EUR][1000 genomes]
rs41275358	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61848984	0.82[EUR][1000 genomes]
rs6679980	0.85[EUR][1000 genomes]
rs67764962	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67772854	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71640006	0.85[EUR][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211505000-211530200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:211505800-211529800	Weak transcription	Ovary	ovary
3	chr1:211509800-211529200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr1:211509800-211544200	Weak transcription	HUVEC	blood vessel
5	chr1:211510600-211555400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr1:211510800-211524000	Genic enhancers	Primary B cells from peripheral blood	blood
7	chr1:211511400-211528600	Weak transcription	Right Atrium	heart
8	chr1:211511600-211533000	Weak transcription	Left Ventricle	heart
9	chr1:211513200-211526600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr1:211513400-211524800	Weak transcription	A549	lung
11	chr1:211513400-211527000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:211513400-211528800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:211514400-211526600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr1:211514800-211527000	Weak transcription	Aorta	Aorta
15	chr1:211514800-211552200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr1:211515000-211526400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr1:211515000-211527000	Weak transcription	Adipose Nuclei	Adipose
18	chr1:211515000-211555000	Weak transcription	Hela-S3	cervix
19	chr1:211515000-211555800	Weak transcription	Esophagus	oesophagus
20	chr1:211515200-211543200	Weak transcription	Colonic Mucosa	Colon
21	chr1:211515400-211548400	Weak transcription	Stomach Mucosa	stomach
22	chr1:211517600-211525000	Weak transcription	Fetal Muscle Leg	muscle
23	chr1:211518000-211525200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr1:211518000-211526400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr1:211518000-211526400	Weak transcription	Spleen	Spleen
26	chr1:211518000-211527000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr1:211518200-211525200	Weak transcription	Fetal Thymus	thymus
28	chr1:211518400-211524200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr1:211519400-211549000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr1:211519600-211530000	Weak transcription	NH-A	brain
31	chr1:211519800-211523600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr1:211519800-211524000	Weak transcription	Lung	lung
33	chr1:211519800-211526600	Weak transcription	Fetal Stomach	stomach
34	chr1:211519800-211526600	Weak transcription	Pancreas	Pancrea
35	chr1:211519800-211528800	Weak transcription	Gastric	stomach
36	chr1:211519800-211532400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr1:211519800-211532400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr1:211519800-211544800	Weak transcription	Fetal Kidney	kidney
39	chr1:211519800-211547400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr1:211519800-211548600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:211520000-211527000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr1:211520400-211526200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr1:211520800-211533800	Weak transcription	Colon Smooth Muscle	Colon
44	chr1:211521000-211526000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr1:211521000-211529800	Weak transcription	HSMMtube	muscle
46	chr1:211521200-211526600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr1:211521200-211530200	Weak transcription	Brain Anterior Caudate	brain
48	chr1:211521200-211550200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr1:211521400-211523600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr1:211521400-211523800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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