Variant report

Variant	rs35724468
Chromosome Location	chr3:81476895-81476896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13096967	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17018889	0.81[ASN][1000 genomes]
rs17018891	0.81[ASN][1000 genomes]
rs35020054	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35959610	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62265363	0.85[ASN][1000 genomes]
rs62265369	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934018	chr3:81413060-81655338	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933756	chr3:81413060-81754738	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1003217	chr3:81435044-81752521	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81474000-81477400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:81474000-81477600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:81474600-81477400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:81474800-81477200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:81474800-81477600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:81476000-81477600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:81476000-81481400	Weak transcription	NHDF-Ad	bronchial
8	chr3:81476000-81481600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr3:81476200-81477400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:81476200-81477400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:81476400-81477800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr3:81476400-81478200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:81476600-81477200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr3:81476600-81477400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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