Variant report

Variant	rs35725335
Chromosome Location	chr18:24622240-24622241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12953982	0.83[ASN][1000 genomes]
rs12966301	0.80[ASN][1000 genomes]
rs12967710	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436902	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1436906	0.83[ASN][1000 genomes]
rs16943175	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16943178	0.83[ASN][1000 genomes]
rs16943184	0.83[ASN][1000 genomes]
rs16943222	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34738073	0.85[ASN][1000 genomes]
rs35443853	1.00[ASN][1000 genomes]
rs4800782	1.00[ASN][1000 genomes]
rs71353424	0.83[ASN][1000 genomes]
rs717284	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1067103	chr18:24524011-24760469	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv543668	chr18:24524011-24760469	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24614000-24631000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr18:24614200-24624600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr18:24614600-24631600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr18:24621000-24622800	Enhancers	Liver	Liver
5	chr18:24621000-24623800	Enhancers	HepG2	liver
6	chr18:24621800-24623400	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr18:24622200-24622400	Enhancers	Left Ventricle	heart
8	chr18:24622200-24622400	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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