Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96320722..96323080-chr13:96327579..96329585,2	MCF-7	breast:
2	chr13:96321544..96324613-chr13:96328623..96330410,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000247400	Chromatin interaction
ENSG00000102580	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12583795	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12583796	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12855055	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17885081	0.86[AFR][1000 genomes]
rs34205636	0.80[AMR][1000 genomes]
rs3886352	0.86[AFR][1000 genomes]
rs3901894	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59576762	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6492821	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7316996	0.89[AFR][1000 genomes]
rs7318892	0.88[AFR][1000 genomes]
rs7334552	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7338266	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7991405	0.87[AFR][1000 genomes]
rs9302084	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9561931	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9561935	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9561936	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9561939	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9590310	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900934	chr13:96255706-96327574	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96317400-96327000	ZNF genes & repeats	Liver	Liver
2	chr13:96322800-96323000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:96322800-96323000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
4	chr13:96322800-96323400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr13:96322800-96326200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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