Variant report

Variant	rs35743198
Chromosome Location	chr15:76363316-76363317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12904578	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12909723	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12911337	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2133097	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2955734	0.90[EUR][1000 genomes]
rs2959835	0.87[EUR][1000 genomes]
rs2959836	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2959838	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2959843	0.90[EUR][1000 genomes]
rs35683640	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35783418	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62027652	0.81[EUR][1000 genomes]
rs66529364	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72736806	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76353000-76363800	Weak transcription	Lung	lung
2	chr15:76353000-76364000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:76353200-76365800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:76358400-76363600	Weak transcription	Placenta	Placenta
5	chr15:76358400-76370400	Weak transcription	Psoas Muscle	Psoas
6	chr15:76358600-76363400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr15:76361400-76370200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr15:76363000-76364200	Enhancers	Placenta Amnion	Placenta Amnion
9	chr15:76363200-76363800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr15:76363200-76363800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr15:76363200-76364200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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