Variant report

Variant	rs35756803
Chromosome Location	chr10:52776553-52776554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10128514	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1015288	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10761651	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10822020	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10822032	0.80[AMR][1000 genomes]
rs10822040	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10822095	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10822101	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10995339	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2879549	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4041333	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6479833	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6479834	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6479835	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6479836	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6479839	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7070037	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7070266	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7076050	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7091997	0.81[AMR][1000 genomes]
rs7093621	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7099130	0.82[AMR][1000 genomes]
rs7100141	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7900993	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7905728	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7916612	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831872	chr10:52663328-52818537	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52756800-52794800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:52768000-52782800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:52772000-52782000	Weak transcription	Right Atrium	heart
4	chr10:52774800-52787400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:52775400-52782000	Weak transcription	Adipose Nuclei	Adipose
6	chr10:52776000-52780200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:52776000-52780400	Weak transcription	Aorta	Aorta
8	chr10:52776000-52782800	Weak transcription	Fetal Lung	lung

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