Variant report

Variant	rs35761129
Chromosome Location	chr20:24118103-24118104
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs36063187	1.00[AMR][1000 genomes]
rs55658154	1.00[AMR][1000 genomes]
rs55904634	1.00[AMR][1000 genomes]
rs56212225	1.00[AMR][1000 genomes]
rs58501060	1.00[AMR][1000 genomes]
rs59465726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61224390	1.00[AMR][1000 genomes]
rs73902595	1.00[AMR][1000 genomes]
rs73902600	1.00[AMR][1000 genomes]
rs73902602	1.00[AMR][1000 genomes]
rs73902764	1.00[AMR][1000 genomes]
rs73902766	1.00[AMR][1000 genomes]
rs73902779	1.00[AMR][1000 genomes]
rs73905103	1.00[AMR][1000 genomes]
rs73905104	1.00[AMR][1000 genomes]
rs73905105	1.00[AMR][1000 genomes]
rs73905108	1.00[AMR][1000 genomes]
rs73905111	1.00[AMR][1000 genomes]
rs73905127	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73905129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73905131	1.00[AMR][1000 genomes]
rs73905132	1.00[AMR][1000 genomes]
rs73905136	1.00[AMR][1000 genomes]
rs73905139	1.00[AMR][1000 genomes]
rs73905147	1.00[AMR][1000 genomes]
rs73905148	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2755330	chr20:24114903-24130700	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24111400-24120400	Enhancers	Placenta	Placenta
2	chr20:24111600-24119600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr20:24114800-24119800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr20:24115600-24119400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr20:24115800-24119000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr20:24115800-24121200	Weak transcription	Pancreas	Pancrea
7	chr20:24117200-24118600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr20:24117200-24118800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr20:24117800-24118600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr20:24117800-24119000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr20:24117800-24119200	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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