Variant report

Variant	rs35767264
Chromosome Location	chr7:6414660-6414661
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:6413015..6417903-chr7:6435938..6439469,5	MCF-7	breast:
2	chr7:6413960..6415587-chr7:6430551..6433223,4	K562	blood:
3	chr14:24740456..24741347-chr7:6414145..6414731,2	Hela-S3	cervix:
4	chr7:6412561..6415167-chr8:145131174..145134036,2	MCF-7	breast:
5	chr7:6412517..6417079-chr7:6439604..6446019,8	MCF-7	breast:
6	chr7:6310725..6312409-chr7:6412991..6414709,2	K562	blood:
7	chr7:6412857..6414877-chr7:6485942..6488132,2	MCF-7	breast:
8	chr7:6412666..6416399-chr7:6429961..6432840,4	MCF-7	breast:
9	chr7:6387247..6388755-chr7:6413232..6415374,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000178896	Chromatin interaction
ENSG00000008256	Chromatin interaction
ENSG00000164535	Chromatin interaction
ENSG00000178397	Chromatin interaction
ENSG00000136238	Chromatin interaction
ENSG00000100949	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10224776	1.00[AMR][1000 genomes]
rs10230345	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10232409	1.00[AMR][1000 genomes]
rs10237734	1.00[AMR][1000 genomes]
rs10239689	1.00[AMR][1000 genomes]
rs10265923	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10267075	1.00[AMR][1000 genomes]
rs10273790	1.00[AMR][1000 genomes]
rs10282329	1.00[AMR][1000 genomes]
rs28624716	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36099272	1.00[AMR][1000 genomes]
rs73344970	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948912	chr7:5803903-6623553	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
3	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
4	nsv1028242	chr7:5819084-6645024	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
5	nsv538712	chr7:5819084-6645024	Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
6	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
7	nsv1021037	chr7:6070792-6426966	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
8	nsv538713	chr7:6070792-6426966	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	nsv530989	chr7:6176729-6438197	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv1020236	chr7:6248930-6690377	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
11	nsv497874	chr7:6296768-6614902	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
12	nsv605999	chr7:6396719-6472881	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	esv3396417	chr7:6413052-6415600	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
14	esv3361320	chr7:6413402-6415500	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6412800-6415000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
2	chr7:6412800-6415000	Active TSS	Monocytes-CD14+_RO01746	blood
3	chr7:6412800-6416600	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr7:6413000-6414800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:6413000-6415600	Active TSS	Colonic Mucosa	Colon
6	chr7:6413000-6416400	Active TSS	K562	blood
7	chr7:6413000-6416600	Active TSS	GM12878-XiMat	blood
8	chr7:6413000-6416800	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr7:6413200-6414800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:6413200-6414800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
11	chr7:6413200-6414800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:6413200-6415000	Active TSS	Primary T cells from cord blood	blood
13	chr7:6413200-6415400	Active TSS	Duodenum Mucosa	Duodenum
14	chr7:6413200-6415400	Active TSS	Thymus	Thymus
15	chr7:6413200-6415400	Active TSS	Hela-S3	cervix
16	chr7:6413200-6416000	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr7:6413200-6416400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr7:6413200-6416600	Active TSS	HepG2	liver
19	chr7:6413400-6414800	Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr7:6413400-6414800	Active TSS	Primary B cells from cord blood	blood
21	chr7:6413400-6414800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr7:6413400-6415000	Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr7:6413400-6415000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
24	chr7:6413400-6415000	Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr7:6413400-6415000	Active TSS	Adipose Nuclei	Adipose
26	chr7:6413400-6415000	Active TSS	Brain Germinal Matrix	brain
27	chr7:6413400-6415000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
28	chr7:6413400-6415000	Active TSS	Rectal Mucosa Donor 31	rectum
29	chr7:6413400-6415000	Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr7:6413400-6415000	Active TSS	Stomach Smooth Muscle	stomach
31	chr7:6413400-6415200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:6413400-6415400	Active TSS	Primary T killer memory cells from peripheral blood	blood
33	chr7:6413400-6415400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr7:6413400-6415400	Active TSS	Rectal Smooth Muscle	rectum
35	chr7:6413400-6415600	Active TSS	Primary T helper naive cells from peripheral blood	blood
36	chr7:6413400-6415800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr7:6413400-6415800	Active TSS	Stomach Mucosa	stomach
38	chr7:6413400-6416000	Active TSS	Muscle Satellite Cultured Cells	--
39	chr7:6413400-6416400	Active TSS	Fetal Intestine Small	intestine
40	chr7:6413400-6416600	Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr7:6413400-6416600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr7:6413600-6414800	Active TSS	Primary T cells fromperipheralblood	blood
43	chr7:6413600-6414800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
44	chr7:6413600-6414800	Active TSS	Fetal Thymus	thymus
45	chr7:6413600-6415000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr7:6413600-6415000	Active TSS	Primary monocytes fromperipheralblood	blood
47	chr7:6413600-6415000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr7:6413600-6415000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr7:6413600-6415000	Active TSS	Cortex derived primary cultured neurospheres	brain
50	chr7:6413600-6415000	Active TSS	Liver	Liver

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