Variant report

Variant	rs35782652
Chromosome Location	chr10:50731264-50731265
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50727908..50731629-chr10:50735183..50738136,3	MCF-7	breast:
2	chr10:50729482..50733326-chr10:50734602..50739448,5	K562	blood:

Variant related genes	Relation type
ENSG00000225830	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv1051636	chr10:50675292-50732280	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv933981	chr10:50730049-50732868	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50696400-50731800	Weak transcription	Small Intestine	intestine
2	chr10:50707000-50732200	Weak transcription	NHDF-Ad	bronchial
3	chr10:50707600-50735600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr10:50715000-50732200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:50717200-50736200	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:50717200-50746000	Weak transcription	Fetal Heart	heart
7	chr10:50717400-50737000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:50717600-50731600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr10:50720400-50746200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:50721600-50734800	Weak transcription	A549	lung
11	chr10:50723000-50734400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:50723000-50741000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr10:50723200-50741000	Strong transcription	Primary T cells from cord blood	blood
14	chr10:50723200-50741000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:50723200-50741000	Strong transcription	HMEC	breast
16	chr10:50723200-50741800	Strong transcription	Osteobl	bone
17	chr10:50723400-50739600	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr10:50723400-50741000	Strong transcription	Fetal Intestine Large	intestine
19	chr10:50723400-50741000	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr10:50723400-50741600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr10:50723400-50741600	Strong transcription	NHEK	skin
22	chr10:50723600-50741000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr10:50723800-50731800	Weak transcription	NHLF	lung
24	chr10:50724200-50732200	Weak transcription	Pancreas	Pancrea
25	chr10:50724400-50734800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr10:50724600-50732200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr10:50724800-50731400	Weak transcription	NH-A	brain
28	chr10:50725000-50746200	Weak transcription	Psoas Muscle	Psoas
29	chr10:50725200-50731600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr10:50725400-50733000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:50725600-50732200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr10:50726600-50732000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:50726600-50734000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:50726800-50731800	Weak transcription	Lung	lung
35	chr10:50726800-50739600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:50727600-50734000	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr10:50727800-50732000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr10:50727800-50733400	Strong transcription	HUVEC	blood vessel
39	chr10:50727800-50741000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr10:50727800-50741000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr10:50727800-50741000	Strong transcription	Adipose Nuclei	Adipose
42	chr10:50727800-50741200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr10:50728000-50732600	Strong transcription	Thymus	Thymus
44	chr10:50728000-50734400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:50728200-50734200	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr10:50728200-50741000	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr10:50728200-50741400	Strong transcription	HSMM	muscle
48	chr10:50728400-50733000	Weak transcription	Fetal Brain Male	brain
49	chr10:50728400-50738600	Strong transcription	Fetal Thymus	thymus
50	chr10:50728400-50741000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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