Variant report

Variant	rs35783847
Chromosome Location	chr11:57000482-57000483
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11228958	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11604352	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2282625	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4938854	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4939117	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4939118	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56987600-57000800	Weak transcription	Spleen	Spleen
2	chr11:56997800-57000600	Enhancers	Adipose Nuclei	Adipose
3	chr11:56998800-57000800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:56998800-57000800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:56998800-57001000	Weak transcription	Left Ventricle	heart
6	chr11:56998800-57001000	Weak transcription	Right Atrium	heart
7	chr11:56998800-57003400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:56998800-57003400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:56998800-57004400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:56998800-57005000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:56999200-57001000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:56999200-57007800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:56999400-57000800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:56999800-57004800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:57000200-57001400	Active TSS	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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