Variant report

Variant	rs35788629
Chromosome Location	chr4:147863829-147863830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:147863799-147863849	HUVEC	blood vessel:	n/a
2	chr4:147863799-147863849	IMR90	lung:	fetal
3	chr4:147863799-147863849	HCT-116	colon:	n/a
4	chr4:147863799-147863849	PrEC	prostate:	n/a
5	chr4:147863799-147863849	ovcar-3	ovarian:	n/a
6	chr4:147863799-147863849	HNPCEpiC	eye:	n/a
7	chr4:147863799-147863849	SK-N-MC	brain:	n/a
8	chr4:147863799-147863849	NT2-D1	testis:	n/a
9	chr4:147863799-147863849	HRPEpiC	eye:	n/a
10	chr4:147863799-147863849	NHBE	bronchial:	n/a
11	chr4:147863799-147863849	MCF10A-Er-Src	breast:	n/a
12	chr4:147863799-147863849	PANC-1	pancreas:	n/a
13	chr4:147863799-147863849	Hela-S3	cervix:	n/a
14	chr4:147863799-147863849	A549	lung:	n/a
15	chr4:147863799-147863849	HEEpiC	esophagus:	n/a
16	chr4:147863799-147863849	ECC-1	luminal epithelium:	n/a
17	chr4:147863799-147863849	SAEC	small airway:	n/a
18	chr4:147863799-147863849	K562	blood:	n/a
19	chr4:147863799-147863849	MCF-7	breast:	n/a
20	chr4:147863799-147863849	CMK	blood:	n/a
21	chr4:147863799-147863849	HIPEpiC	eye:	n/a
22	chr4:147863799-147863849	Hepatocyte	liver:	n/a
23	chr4:147863799-147863849	AG04450	lung:	fetal
24	chr4:147863799-147863849	HCF	heart:	n/a
25	chr4:147863799-147863849	SKMC	muscle:	n/a
26	chr4:147863799-147863849	AG09309	skin:	n/a
27	chr4:147863799-147863849	HEK293	kidney:	embryo
28	chr4:147863799-147863849	SK-N-SH	brain:	n/a
29	chr4:147863799-147863849	HCPEpiC	choroid plexus:	n/a
30	chr4:147863799-147863849	Jurkat	blood:	n/a
31	chr4:147863799-147863849	HRCEpiC	kidney:	n/a
32	chr4:147863799-147863849	RPTEC	kidney:	n/a
33	chr4:147863799-147863849	GM12892	blood:	n/a
34	chr4:147863799-147863849	H1-hESC	embryonic stem cell:	embryo
35	chr4:147863799-147863849	PFSK-1	brain:	n/a
36	chr4:147863799-147863849	SK-N-SH_RA	brain:	n/a
37	chr4:147863799-147863849	GM19239	blood:	n/a
38	chr4:147863799-147863849	NB4	blood:	n/a
39	chr4:147863799-147863849	HAEpiC	amniotic membrane:	n/a
40	chr4:147863799-147863849	LNCaP	prostate:	n/a
41	chr4:147863799-147863849	AG10803	skin:	n/a
42	chr4:147863799-147863849	BE2_C	brain:	n/a
43	chr4:147863799-147863849	NHDF-neo	bronchial:	n/a
44	chr4:147863799-147863849	GM12891	blood:	n/a
45	chr4:147863799-147863849	Caco-2	colon:	n/a
46	chr4:147863799-147863849	NH-A	brain:	n/a
47	chr4:147863799-147863849	HL-60	blood:	n/a
48	chr4:147863799-147863849	HPAEpiC	pulmonary alveolar:	n/a
49	chr4:147863799-147863849	T-47D	breast:	n/a
50	chr4:147863799-147863849	HMEC	breast:	n/a

No data

Variant related genes	Relation type
TTC29	CpG island

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2043704	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3810845	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4835060	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68011593	0.82[AMR][1000 genomes]
rs72943815	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72960363	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72960364	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs868578	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147863800-147864000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:147863800-147864200	Enhancers	Fetal Thymus	thymus
3	chr4:147863800-147865200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:147863800-147865800	Enhancers	HUES64 Cell Line	embryonic stem cell

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