Variant report

Variant	rs35792458
Chromosome Location	chr8:10822431-10822432
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10811750..10814627-chr8:10819721..10822751,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10087923	0.88[AMR][1000 genomes]
rs10088408	0.80[AMR][1000 genomes]
rs10111950	0.81[AMR][1000 genomes]
rs11250098	0.82[ASN][1000 genomes]
rs11250099	0.82[ASN][1000 genomes]
rs4314618	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4841465	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv521721	chr8:10802102-10836472	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs35792458	C8orf5	Cis_1M	lymphoblastoid	RTeQTL
rs35792458	AF131215.2	cis	Nerve Tibial	GTEx

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10819000-10822800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:10819400-10822800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr8:10819600-10823000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr8:10819800-10823000	Weak transcription	Brain Germinal Matrix	brain
5	chr8:10820000-10822600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr8:10820000-10822600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr8:10820000-10822600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr8:10820000-10822600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:10820000-10822600	Weak transcription	Brain Anterior Caudate	brain
10	chr8:10820000-10822800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr8:10820000-10822800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr8:10820000-10822800	Weak transcription	GM12878-XiMat	blood
13	chr8:10822000-10822600	Enhancers	Primary T cells fromperipheralblood	blood
14	chr8:10822200-10822800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr8:10822200-10822800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr8:10822200-10823000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr8:10822200-10823000	Enhancers	Fetal Brain Female	brain
18	chr8:10822200-10823200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr8:10822200-10823600	Enhancers	Fetal Brain Male	brain
20	chr8:10822400-10823600	Enhancers	Primary B cells from peripheral blood	blood
21	chr8:10822400-10823800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr8:10822400-10824000	Bivalent Enhancer	Fetal Muscle Leg	muscle

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