Variant report

Variant	rs35807969
Chromosome Location	chr1:93459069-93459070
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:93426802..93428394-chr1:93457391..93459603,2	K562	blood:
2	chr1:93458427..93460268-chr1:93644070..93646479,2	K562	blood:
3	chr1:93458381..93461372-chr1:93479810..93482559,2	MCF-7	breast:
4	chr1:93317754..93320397-chr1:93457580..93459543,2	K562	blood:
5	chr1:93452194..93457760-chr1:93458258..93461631,4	K562	blood:
6	chr1:93304783..93306730-chr1:93457486..93459608,2	K562	blood:
7	chr1:93427351..93429788-chr1:93458702..93460989,2	MCF-7	breast:
8	chr1:93431361..93434358-chr1:93458613..93460256,2	K562	blood:
9	chr1:93323949..93325580-chr1:93458442..93460738,42	K562	blood:
10	chr1:93250962..93252670-chr1:93458393..93461376,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000207523	Chromatin interaction
ENSG00000154511	Chromatin interaction
ENSG00000122483	Chromatin interaction
ENSG00000117500	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10493863	0.86[EUR][1000 genomes]
rs10874751	0.83[EUR][1000 genomes]
rs10874753	0.89[EUR][1000 genomes]
rs11164835	0.85[EUR][1000 genomes]
rs11164836	0.85[EUR][1000 genomes]
rs11164840	0.84[EUR][1000 genomes]
rs11164842	0.86[EUR][1000 genomes]
rs11164843	0.86[EUR][1000 genomes]
rs11164844	0.86[EUR][1000 genomes]
rs11164845	0.86[EUR][1000 genomes]
rs11577636	0.86[EUR][1000 genomes]
rs11578986	0.86[EUR][1000 genomes]
rs11583491	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11587920	0.86[EUR][1000 genomes]
rs12059883	0.85[EUR][1000 genomes]
rs12060952	0.85[EUR][1000 genomes]
rs12065253	0.86[EUR][1000 genomes]
rs12066638	0.84[EUR][1000 genomes]
rs12069727	0.86[EUR][1000 genomes]
rs12074608	0.86[EUR][1000 genomes]
rs12081675	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12745968	0.86[EUR][1000 genomes]
rs17380908	0.86[EUR][1000 genomes]
rs2255717	0.84[EUR][1000 genomes]
rs2255723	0.85[EUR][1000 genomes]
rs2263247	0.84[EUR][1000 genomes]
rs2481713	0.80[EUR][1000 genomes]
rs2492294	0.80[EUR][1000 genomes]
rs2774945	0.80[EUR][1000 genomes]
rs2774954	0.83[EUR][1000 genomes]
rs2774956	0.84[EUR][1000 genomes]
rs2811589	0.84[EUR][1000 genomes]
rs2811590	0.84[EUR][1000 genomes]
rs2811591	0.82[EUR][1000 genomes]
rs2811593	0.80[EUR][1000 genomes]
rs2811596	0.80[EUR][1000 genomes]
rs2811597	0.80[EUR][1000 genomes]
rs2811598	0.80[EUR][1000 genomes]
rs34041593	0.86[ASN][1000 genomes]
rs34084844	0.85[EUR][1000 genomes]
rs34098754	0.86[ASN][1000 genomes]
rs34389767	0.82[EUR][1000 genomes]
rs34398175	0.85[EUR][1000 genomes]
rs35367625	0.86[EUR][1000 genomes]
rs4351651	0.84[EUR][1000 genomes]
rs4420089	0.85[EUR][1000 genomes]
rs4450029	0.86[EUR][1000 genomes]
rs4561051	0.85[EUR][1000 genomes]
rs4592265	0.86[EUR][1000 genomes]
rs56193705	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6604028	0.84[EUR][1000 genomes]
rs6604029	0.86[EUR][1000 genomes]
rs6604030	0.86[EUR][1000 genomes]
rs6666223	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6694051	0.86[EUR][1000 genomes]
rs6698082	0.85[EUR][1000 genomes]
rs6698179	0.86[EUR][1000 genomes]
rs6698233	0.86[EUR][1000 genomes]
rs7417198	0.86[EUR][1000 genomes]
rs7515257	0.86[EUR][1000 genomes]
rs7517935	0.86[EUR][1000 genomes]
rs7542608	0.86[EUR][1000 genomes]
rs7543548	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7550347	0.86[EUR][1000 genomes]
rs9439948	0.84[EUR][1000 genomes]
rs9440134	0.84[EUR][1000 genomes]
rs949915	0.84[EUR][1000 genomes]
rs9651257	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93451800-93466000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:93454600-93459800	Enhancers	Primary T cells from cord blood	blood
3	chr1:93454600-93459800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr1:93454800-93459800	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr1:93455400-93459800	Enhancers	Primary B cells from peripheral blood	blood
6	chr1:93456000-93461000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:93456200-93461200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:93456400-93459800	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr1:93456600-93459600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr1:93456600-93459800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:93456600-93459800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr1:93456600-93459800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr1:93457400-93459200	Weak transcription	HepG2	liver
14	chr1:93457800-93459200	Weak transcription	Primary B cells from cord blood	blood
15	chr1:93457800-93459200	Weak transcription	K562	blood
16	chr1:93458000-93459800	Enhancers	Dnd41	blood
17	chr1:93458200-93459200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:93458200-93459200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr1:93458400-93459400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr1:93458600-93459800	Enhancers	HSMMtube	muscle
21	chr1:93458800-93459200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr1:93459000-93459600	Enhancers	HSMM	muscle

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