Variant report

Variant	rs35815769
Chromosome Location	chr20:24098598-24098599
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24092580..24094161-chr20:24096209..24099117,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1005527	0.83[EUR][1000 genomes]
rs11696686	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1555286	0.83[ASN][1000 genomes]
rs17249809	0.82[EUR][1000 genomes]
rs2224232	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6114487	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6114488	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6114489	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6132700	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6138203	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6138209	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6138214	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7262390	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs761863	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs761864	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs910776	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24097000-24100000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr20:24097200-24099200	Bivalent Enhancer	Fetal Stomach	stomach
3	chr20:24097200-24100000	Enhancers	Fetal Muscle Leg	muscle
4	chr20:24097400-24099600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr20:24097600-24099000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr20:24097600-24099400	Enhancers	NH-A	brain
7	chr20:24097800-24098600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr20:24097800-24099800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr20:24097800-24100000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr20:24097800-24100200	Enhancers	Osteobl	bone
11	chr20:24098000-24099200	Weak transcription	NHLF	lung
12	chr20:24098000-24099600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr20:24098000-24099600	Enhancers	Placenta Amnion	Placenta Amnion
14	chr20:24098200-24098800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr20:24098200-24099000	Enhancers	Stomach Smooth Muscle	stomach
16	chr20:24098200-24099200	Weak transcription	Esophagus	oesophagus
17	chr20:24098200-24100200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr20:24098200-24100600	Enhancers	Ovary	ovary
19	chr20:24098200-24100800	Enhancers	HUVEC	blood vessel
20	chr20:24098400-24098600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr20:24098400-24099800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr20:24098400-24099800	Bivalent Enhancer	Adipose Nuclei	Adipose
23	chr20:24098400-24099800	Enhancers	Fetal Lung	lung
24	chr20:24098400-24099800	Enhancers	Rectal Smooth Muscle	rectum
25	chr20:24098400-24100000	Enhancers	Lung	lung
26	chr20:24098400-24100800	Enhancers	Fetal Thymus	thymus

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