Variant report

Variant	rs35818376
Chromosome Location	chr2:11607895-11607896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr2:11605223-11608297	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:11604833..11608003-chr2:11882353..11886330,4	K562	blood:

Variant related genes	Relation type
E2F6	TF binding region
ENSG00000230790	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10186511	0.88[ASN][1000 genomes]
rs10192676	0.85[ASN][1000 genomes]
rs10803737	0.84[ASN][1000 genomes]
rs10929740	0.83[ASN][1000 genomes]
rs10929741	0.81[ASN][1000 genomes]
rs10929742	0.89[ASN][1000 genomes]
rs10929745	0.86[ASN][1000 genomes]
rs10929746	0.86[ASN][1000 genomes]
rs10929747	0.86[ASN][1000 genomes]
rs10929748	0.86[ASN][1000 genomes]
rs10929749	0.86[ASN][1000 genomes]
rs11680919	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11685543	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11686138	0.89[ASN][1000 genomes]
rs11687178	0.89[ASN][1000 genomes]
rs11687681	0.83[ASN][1000 genomes]
rs11693023	0.83[ASN][1000 genomes]
rs11694857	0.89[ASN][1000 genomes]
rs12472962	0.89[ASN][1000 genomes]
rs12611958	0.89[ASN][1000 genomes]
rs12615317	0.89[ASN][1000 genomes]
rs12988106	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1369500	0.86[ASN][1000 genomes]
rs1369501	0.86[ASN][1000 genomes]
rs1369502	0.86[ASN][1000 genomes]
rs1369503	0.86[ASN][1000 genomes]
rs34075853	0.86[ASN][1000 genomes]
rs35047869	0.86[ASN][1000 genomes]
rs35160324	0.86[ASN][1000 genomes]
rs35306821	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35606161	0.86[ASN][1000 genomes]
rs35727311	0.89[ASN][1000 genomes]
rs35734540	0.86[ASN][1000 genomes]
rs35973068	0.86[ASN][1000 genomes]
rs4292073	0.89[ASN][1000 genomes]
rs4491705	0.80[ASN][1000 genomes]
rs4553788	0.89[ASN][1000 genomes]
rs4668726	0.92[EUR][1000 genomes]
rs60323348	0.86[ASN][1000 genomes]
rs60819231	0.86[ASN][1000 genomes]
rs61016299	0.89[ASN][1000 genomes]
rs6432193	0.89[ASN][1000 genomes]
rs6432195	0.80[ASN][1000 genomes]
rs6432196	0.87[ASN][1000 genomes]
rs6432197	0.86[ASN][1000 genomes]
rs6432198	0.86[ASN][1000 genomes]
rs6432200	0.88[EUR][1000 genomes]
rs6705284	0.86[ASN][1000 genomes]
rs6714698	0.86[ASN][1000 genomes]
rs6719876	0.86[ASN][1000 genomes]
rs6724082	0.86[ASN][1000 genomes]
rs6724463	0.86[ASN][1000 genomes]
rs6729114	0.89[ASN][1000 genomes]
rs6751915	0.89[ASN][1000 genomes]
rs6753836	0.86[ASN][1000 genomes]
rs7425786	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7556984	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7565965	0.86[ASN][1000 genomes]
rs7577942	0.86[ASN][1000 genomes]
rs7584175	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9789694	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11607000-11621200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:11607200-11608400	Enhancers	Psoas Muscle	Psoas
3	chr2:11607200-11611600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:11607200-11622400	Weak transcription	Spleen	Spleen
5	chr2:11607400-11608000	Enhancers	A549	lung
6	chr2:11607400-11612000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:11607400-11612000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr2:11607600-11609800	Weak transcription	HepG2	liver
9	chr2:11607600-11611400	Weak transcription	Dnd41	blood
10	chr2:11607600-11618000	Weak transcription	Primary T cells from cord blood	blood

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