Variant report

Variant	rs35824615
Chromosome Location	chr4:100538454-100538455
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100538079..100540752-chr4:100541523..100543653,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11097666	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13121590	0.84[EUR][1000 genomes]
rs13129571	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13135675	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13135826	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13142452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13151234	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17029189	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17029211	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17029213	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17029215	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17029260	0.97[EUR][1000 genomes]
rs17029263	0.97[EUR][1000 genomes]
rs17029264	0.83[EUR][1000 genomes]
rs34135026	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34246356	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34678000	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34734558	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34756677	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34777713	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34870956	0.97[EUR][1000 genomes]
rs34874297	0.97[EUR][1000 genomes]
rs35074439	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35189300	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35391161	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35402611	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35561084	0.90[EUR][1000 genomes]
rs35595171	0.90[EUR][1000 genomes]
rs35661838	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35826214	0.97[EUR][1000 genomes]
rs35992230	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41275719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6532821	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6825904	0.97[EUR][1000 genomes]
rs6851824	0.97[EUR][1000 genomes]
rs71612697	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71612700	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71612702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71614603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71614604	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71619723	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7665414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7667001	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7688278	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7695727	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100516400-100546200	Strong transcription	Liver	Liver
2	chr4:100518800-100545200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:100522600-100545800	Strong transcription	Fetal Intestine Large	intestine
4	chr4:100532800-100545200	Weak transcription	Aorta	Aorta
5	chr4:100534800-100545400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:100535000-100539800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:100535000-100542000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr4:100535600-100538600	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr4:100535600-100538800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr4:100536000-100538600	Strong transcription	Duodenum Mucosa	Duodenum
11	chr4:100536800-100545200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr4:100537000-100543400	Weak transcription	Colon Smooth Muscle	Colon
13	chr4:100537600-100543400	Weak transcription	Psoas Muscle	Psoas
14	chr4:100537600-100544200	Strong transcription	HepG2	liver
15	chr4:100538000-100539400	Enhancers	Rectal Smooth Muscle	rectum
16	chr4:100538200-100541800	Weak transcription	Fetal Intestine Small	intestine
17	chr4:100538200-100556000	Weak transcription	Fetal Muscle Leg	muscle
18	chr4:100538400-100538800	Enhancers	HMEC	breast
19	chr4:100538400-100538800	Enhancers	NHEK	skin

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