Variant report

Variant	rs35827241
Chromosome Location	chr15:76796351-76796352
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11856717	0.86[AFR][1000 genomes]
rs1568083	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2404972	1.00[AFR][1000 genomes]
rs4886489	0.86[AFR][1000 genomes]
rs4886804	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542438	chr15:76697056-76892157	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv904400	chr15:76772062-77085283	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs35827241	SCAPER	Cis_1M	lymphoblastoid	RTeQTL
rs35827241	ISL2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76725800-76812600	Weak transcription	Left Ventricle	heart
2	chr15:76785400-76799800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:76788000-76796600	Weak transcription	HSMM	muscle
4	chr15:76788200-76798400	Weak transcription	Dnd41	blood
5	chr15:76788400-76813600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr15:76789200-76796600	Weak transcription	Adipose Nuclei	Adipose
7	chr15:76789600-76796400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr15:76790000-76802000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:76791200-76806200	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:76792000-76796400	Enhancers	Fetal Intestine Small	intestine
11	chr15:76792600-76798600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr15:76792600-76801800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:76793200-76796400	Enhancers	Fetal Intestine Large	intestine
14	chr15:76793800-76796600	Weak transcription	Ovary	ovary
15	chr15:76793800-76798600	Weak transcription	Placenta	Placenta
16	chr15:76793800-76799400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:76794000-76810400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:76794200-76798200	Weak transcription	Pancreas	Pancrea
19	chr15:76794200-76806400	Weak transcription	Gastric	stomach
20	chr15:76794400-76797200	Weak transcription	Lung	lung
21	chr15:76794600-76796600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr15:76794800-76796400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:76794800-76796400	Weak transcription	Fetal Thymus	thymus
24	chr15:76794800-76797200	Weak transcription	Thymus	Thymus
25	chr15:76794800-76801200	Weak transcription	Right Ventricle	heart
26	chr15:76795000-76797200	Strong transcription	Primary T cells from cord blood	blood
27	chr15:76795200-76796800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr15:76795200-76797600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr15:76795200-76798400	Weak transcription	Brain Angular Gyrus	brain
30	chr15:76795200-76806800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr15:76795400-76796400	Weak transcription	Primary B cells from cord blood	blood
32	chr15:76795400-76798200	Weak transcription	Esophagus	oesophagus
33	chr15:76795800-76796400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr15:76795800-76810600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr15:76796200-76796600	Weak transcription	Fetal Stomach	stomach
36	chr15:76796200-76796800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr15:76796200-76797000	Strong transcription	Primary hematopoietic stem cells	blood
38	chr15:76796200-76797200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr15:76796200-76797200	Strong transcription	Liver	Liver
40	chr15:76796200-76797400	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr15:76796200-76799400	Weak transcription	Duodenum Mucosa	Duodenum

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